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Data Mining Techniques for the Life Sciences

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Cover of 'Data Mining Techniques for the Life Sciences'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Data Mining Techniques for the Life Sciences
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    Chapter 2 Protein Structure Databases.
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    Chapter 3 The MIntAct Project and Molecular Interaction Databases.
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    Chapter 4 Applications of Protein Thermodynamic Database for Understanding Protein Mutant Stability and Designing Stable Mutants.
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    Chapter 5 Classification and Exploration of 3D Protein Domain Interactions Using Kbdock.
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    Chapter 6 Data Mining of Macromolecular Structures.
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    Chapter 7 Criteria to Extract High-Quality Protein Data Bank Subsets for Structure Users.
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    Chapter 8 Homology-Based Annotation of Large Protein Datasets.
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    Chapter 9 Data Mining Techniques for the Life Sciences
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    Chapter 10 Improving the Accuracy of Fitted Atomic Models in Cryo-EM Density Maps of Protein Assemblies Using Evolutionary Information from Aligned Homologous Proteins.
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    Chapter 11 Systematic Exploration of an Efficient Amino Acid Substitution Matrix: MIQS.
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    Chapter 12 Promises and Pitfalls of High-Throughput Biological Assays.
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    Chapter 13 Data Mining Techniques for the Life Sciences
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    Chapter 14 Predicting Conformational Disorder.
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    Chapter 15 Classification of Protein Kinases Influenced by Conservation of Substrate Binding Residues.
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    Chapter 16 Spectral-Statistical Approach for Revealing Latent Regular Structures in DNA Sequence.
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    Chapter 17 Protein Crystallizability.
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    Chapter 18 Data Mining Techniques for the Life Sciences
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    Chapter 19 Data Mining Techniques for the Life Sciences
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    Chapter 20 Functional Analysis of Metabolomics Data.
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    Chapter 21 Data Mining Techniques for the Life Sciences
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    Chapter 22 A Broad Overview of Computational Methods for Predicting the Pathophysiological Effects of Non-synonymous Variants.
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    Chapter 23 Recommendation Techniques for Drug-Target Interaction Prediction and Drug Repositioning.
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    Chapter 24 Protein Residue Contacts and Prediction Methods.
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    Chapter 25 The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.
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    Chapter 26 Data Mining Techniques for the Life Sciences
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    Chapter 27 Data Mining Techniques for the Life Sciences
Attention for Chapter 19: Data Mining Techniques for the Life Sciences
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Chapter title
Data Mining Techniques for the Life Sciences
Chapter number 19
Book title
Data Mining Techniques for the Life Sciences
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3572-7_19
Pubmed ID
Book ISBNs
978-1-4939-3570-3, 978-1-4939-3572-7
Authors

Hoehndorf, Robert, Gkoutos, Georgios V, Schofield, Paul N, Robert Hoehndorf, Georgios V. Gkoutos, Paul N. Schofield, Gkoutos, Georgios V., Schofield, Paul N.

Editors

Oliviero Carugo, Frank Eisenhaber

Abstract

The use of ontologies has increased rapidly over the past decade and they now provide a key component of most major databases in biology and biomedicine. Consequently, datamining over these databases benefits from considering the specific structure and content of ontologies, and several methods have been developed to use ontologies in datamining applications. Here, we discuss the principles of ontology structure, and datamining methods that rely on ontologies. The impact of these methods in the biological and biomedical sciences has been profound and is likely to increase as more datasets are becoming available using common, shared ontologies.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 60 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Indonesia 1 2%
Italy 1 2%
Brazil 1 2%
India 1 2%
Czechia 1 2%
Japan 1 2%
United States 1 2%
Poland 1 2%
Unknown 52 87%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 12 20%
Researcher 10 17%
Student > Master 8 13%
Lecturer 7 12%
Other 6 10%
Other 13 22%
Unknown 4 7%
Readers by discipline Count As %
Computer Science 28 47%
Biochemistry, Genetics and Molecular Biology 5 8%
Engineering 5 8%
Agricultural and Biological Sciences 5 8%
Social Sciences 4 7%
Other 8 13%
Unknown 5 8%