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ERK Signaling

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Cover of 'ERK Signaling'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 How Genetics Has Helped Piece Together the MAPK Signaling Pathway.
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    Chapter 2 In Vitro Enzyme Kinetics Analysis of EGFR.
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    Chapter 3 High-Throughput Analysis of Mammalian Receptor Tyrosine Kinase Activation in Yeast Cells.
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    Chapter 4 Structural Studies of ERK2 Protein Complexes.
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    Chapter 5 Isolation and Characterization of Intrinsically Active (MEK-Independent) Mutants of Mpk1/Erk.
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    Chapter 6 Assaying Activation and Subcellular Localization of ERK in Cells and Tissues.
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    Chapter 7 Detection and Functional Analysis of SUMO-Modified MEK.
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    Chapter 8 Single-Step Affinity Purification of ERK Signaling Complexes Using the Streptavidin-Binding Peptide (SBP) Tag.
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    Chapter 9 High-Throughput In Vitro Identification of Direct MAPK/Erk Substrates.
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    Chapter 10 Global Identification of ERK Substrates by Phosphoproteomics Based on IMAC and 2D-DIGE.
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    Chapter 11 Analysis of Ras/ERK Compartmentalization by Subcellular Fractionation.
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    Chapter 12 Cell-Based Assays to Study ERK Pathway/Caveolin1 Interactions.
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    Chapter 13 The Nuclear Translocation of ERK.
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    Chapter 14 Visualization of RAS/MAPK Signaling In Situ by the Proximity Ligation Assay (PLA).
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    Chapter 15 Measuring ERK Activity Dynamics in Single Living Cells Using FRET Biosensors.
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    Chapter 16 Quantifying Tensile Force and ERK Phosphorylation on Actin Stress Fibers.
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    Chapter 17 Co-culture Activation of MAP Kinase in Drosophila S2 Cells.
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    Chapter 18 ERK Signaling
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    Chapter 19 3D Organotypic Culture Model to Study Components of ERK Signaling.
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    Chapter 20 Genetic Validation of Cell Proliferation via Ras-Independent Activation of the Raf/Mek/Erk Pathway.
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    Chapter 21 Genome-Wide Analysis of RAS/ERK Signaling Targets.
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    Chapter 22 Probing Chromatin Modifications in Response to ERK Signaling.
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    Chapter 23 Analyzing pERK Activation During Planarian Regeneration.
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    Chapter 24 Discovering Functional ERK Substrates Regulating Caenorhabditis elegans Germline Development.
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    Chapter 25 Reconstructing ERK Signaling in the Drosophila Embryo from Fixed Images.
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    Chapter 26 Using CRISPR-Cas9 to Study ERK Signaling in Drosophila.
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    Chapter 27 Analyzing ERK Signal Dynamics During Zebrafish Somitogenesis.
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    Chapter 28 Modeling RASopathies with Genetically Modified Mouse Models.
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    Chapter 29 Dissecting Cell-Fate Determination Through Integrated Mathematical Modeling of the ERK/MAPK Signaling Pathway.
Attention for Chapter 11: Analysis of Ras/ERK Compartmentalization by Subcellular Fractionation.
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Chapter title
Analysis of Ras/ERK Compartmentalization by Subcellular Fractionation.
Chapter number 11
Book title
ERK Signaling
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6424-6_11
Pubmed ID
Book ISBNs
978-1-4939-6422-2, 978-1-4939-6424-6
Authors

Lorena Agudo-Ibañez, Piero Crespo, Berta Casar

Editors

Gerardo Jimenez

Abstract

A vast number of stimuli use the Ras/Raf/MEK/ERK signaling cascade to transmit signals from their cognate receptors, in order to regulate multiple cellular functions, including key processes such as proliferation, cell cycle progression, differentiation, and survival. The duration, intensity and specificity of the responses are, in part, controlled by the compartmentalization/subcellular localization of the signaling intermediaries. Ras proteins are found in different plasma membrane microdomains and endomembranes. At these localizations, Ras is subject to site-specific regulatory mechanisms, distinctively engaging effector pathways and switching-on diverse genetic programs to generate a multitude of biological responses. The Ras effector pathway leading to ERKs activation is also subject to space-related regulatory processes. About half of ERK1/2 substrates are found in the nucleus and function mainly as transcription factors. The other half resides in the cytosol and other cellular organelles. Such subcellular distribution enhances the complexity of the Ras/ERK cascade and constitutes an essential mechanism to endow variability to its signals, which enables their participation in the regulation of a broad variety of functions. Thus, analyzing the subcellular compartmentalization of the members of the Ras/ERK cascade constitutes an important factor to be taken into account when studying specific biological responses evoked by Ras/ERK signals. Herein, we describe methods for such purpose.

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Mendeley readers

The data shown below were compiled from readership statistics for 6 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 6 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 1 17%
Student > Bachelor 1 17%
Other 1 17%
Student > Doctoral Student 1 17%
Unknown 2 33%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 2 33%
Chemical Engineering 1 17%
Agricultural and Biological Sciences 1 17%
Unknown 2 33%