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Microbial Proteomics

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Cover of 'Microbial Proteomics'

Table of Contents

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    Book Overview
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    Chapter 1 Filter-Aided Sample Preparation for Proteome Analysis
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    Chapter 2 Protein Enrichment from Highly Dilute Samples with StrataClean
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    Chapter 3 Membrane Proteomics in Gram-Positive Bacteria: Two Complementary Approaches to Target the Hydrophobic Species of Proteins
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    Chapter 4 Enrichment of Cell Surface-Associated Proteins in Gram-Positive Bacteria by Biotinylation or Trypsin Shaving for Mass Spectrometry Analysis
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    Chapter 5 Preparation of Bacterial Magnetosomes for Proteome Analysis
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    Chapter 6 Analysis of Legionella Metabolism by Pathogen Vacuole Proteomics
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    Chapter 7 Detection and Identification of Low-Abundant Proteins Using HPE Gels, Fluorescent Stains, and MALDI-ToF-ToF-MS
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    Chapter 8 Applications of Difference Gel Electrophoresis (DIGE) in the Study of Microorganisms
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    Chapter 9 Proteomic Signatures in Staphylococcus aureus
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    Chapter 10 How to Assess Protein Stability: Half-Life Determination of a Regulatory Protein in Bacillus subtilis
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    Chapter 11 Absolute Protein Quantification Using AQUA-Calibrated 2D-PAGE
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    Chapter 12 Sulfur-34S and 36S Stable Isotope Labeling of Amino Acids for Quantification (SULAQ34/36) of Proteome Analyses
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    Chapter 13 Metabolic Labeling of Microorganisms with Stable Heavy Nitrogen Isotopes (15N)
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    Chapter 14 Next-Generation Trapping of Protease Substrates by Label-Free Proteomics
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    Chapter 15 In vivo Proteomics Approaches for the Analysis of Bacterial Adaptation Reactions in Host–Pathogen Settings
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    Chapter 16 Phosphopeptide Enrichment from Bacterial Samples Utilizing Titanium Oxide Affinity Chromatography
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    Chapter 17 Phosphoproteomics in Microbiology: Protocols for Studying Streptomyces coelicolor Differentiation
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    Chapter 18 Thiol-Redox Proteomics to Study Reversible Protein Thiol Oxidations in Bacteria
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    Chapter 19 Sequential Isolation of DNA, RNA, Protein, and Metabolite Fractions from Murine Organs and Intestinal Contents for Integrated Omics of Host–Microbiota Interactions
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    Chapter 20 Utilization of a Detergent-Based Method for Direct Microbial Cellular Lysis/Proteome Extraction from Soil Samples for Metaproteomics Studies
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    Chapter 21 Sample Preparation for Metaproteome Analyses of Soil and Leaf Litter
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    Chapter 22 Centrifugation-Based Enrichment of Bacterial Cell Populations for Metaproteomic Studies on Bacteria–Invertebrate Symbioses
Attention for Chapter 13: Metabolic Labeling of Microorganisms with Stable Heavy Nitrogen Isotopes (15N)
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Chapter title
Metabolic Labeling of Microorganisms with Stable Heavy Nitrogen Isotopes (15N)
Chapter number 13
Book title
Microbial Proteomics
Published in
Methods in molecular biology, September 2018
DOI 10.1007/978-1-4939-8695-8_13
Pubmed ID
Book ISBNs
978-1-4939-8693-4, 978-1-4939-8695-8
Authors

Andreas Otto, Otto, Andreas

Abstract

Quantitative Proteomics based on stable isotope labeling by 15N is a versatile method in determination of changes in microbial protein expression profiles. Once set up, the workflow relies on defined chemical or commercially available complex media leading to universal heavy labeling by the stable isotope 15N. This chapter provides a detailed protocol for labeling of different bacteria and the strategy for evaluating the incorporation rate of the heavy stable isotopes in the sample is discussed.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 11 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 11 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 27%
Librarian 1 9%
Student > Doctoral Student 1 9%
Unspecified 1 9%
Professor 1 9%
Other 3 27%
Unknown 1 9%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 4 36%
Agricultural and Biological Sciences 2 18%
Environmental Science 1 9%
Unspecified 1 9%
Immunology and Microbiology 1 9%
Other 0 0%
Unknown 2 18%