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Bacterial Transcriptional Control

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Cover of 'Bacterial Transcriptional Control'

Table of Contents

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    Book Overview
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    Chapter 1 Mapping the Escherichia coli Transcription Elongation Complex with Exonuclease III
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    Chapter 2 Purification of Bacterial RNA Polymerase: Tools and Protocols
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    Chapter 3 Monitoring Translocation of Multisubunit RNA Polymerase Along the DNA with Fluorescent Base Analogues
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    Chapter 4 In vitro and in vivo methodologies for studying the sigma 54-dependent transcription.
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    Chapter 5 Methods for the Assembly and Analysis of In Vitro Transcription-Coupled-to-Translation Systems.
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    Chapter 6 Site-Specific Incorporation of Probes into RNA Polymerase by Unnatural-Amino-Acid Mutagenesis and Staudinger–Bertozzi Ligation
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    Chapter 7 Reconstitution of factor-dependent, promoter proximal pausing in Drosophila nuclear extracts.
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    Chapter 8 Direct Competition Assay for Transcription Fidelity
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    Chapter 9 Single-Stranded DNA Aptamers for Functional Probing of Bacterial RNA Polymerase
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    Chapter 10 Biochemical Analysis of Transcription Termination by RNA Polymerase III from Yeast Saccharomyces cerevisiae.
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    Chapter 11 Use of RNA Polymerase Molecular Beacon Assay to Measure RNA Polymerase Interactions with Model Promoter Fragments
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    Chapter 12 Preparation of cDNA libraries for high-throughput RNA sequencing analysis of RNA 5' ends.
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    Chapter 13 In Situ Footprinting of E. coli Transcription Elongation Complex with Chloroacetaldehyde
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    Chapter 14 Using Solutes and Kinetics to Probe Large Conformational Changes in the Steps of Transcription Initiation
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    Chapter 15 Manipulating Archaeal Systems to Permit Analyses of Transcription Elongation-Termination Decisions In Vitro
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    Chapter 16 Purification of active RNA polymerase I from yeast.
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    Chapter 17 Transcription in Archaea: Preparation of Methanocaldococcus jannaschii Transcription Machinery.
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    Chapter 18 Transcription in Archaea: In Vitro Transcription Assays for mjRNAP.
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    Chapter 19 Experimental Analysis of hFACT Action During Pol II Transcription In Vitro
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    Chapter 20 ChIP-Seq for Genome-Scale Analysis of Bacterial DNA-Binding Proteins.
Attention for Chapter 17: Transcription in Archaea: Preparation of Methanocaldococcus jannaschii Transcription Machinery.
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Chapter title
Transcription in Archaea: Preparation of Methanocaldococcus jannaschii Transcription Machinery.
Chapter number 17
Book title
Bacterial Transcriptional Control
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2392-2_17
Pubmed ID
Book ISBNs
978-1-4939-2391-5, 978-1-4939-2392-2
Authors

Katherine Smollett, Fabian Blombach, Finn Werner, Smollett, Katherine, Blombach, Fabian, Werner, Finn

Abstract

Archaeal RNA polymerase and general transcription factors are more closely related to those of eukaryotes than of bacteria. As such the study of transcription of archaea is important both in terms of examination of the evolution of the transcriptional machinery and as a simplified tool for eukaryotic transcription. In particular, the hyperthermophilic Methanocaldococcus jannaschii provides us with a fully recombinant RNA polymerase system allowing for much more detailed in vitro examination of the roles of different components during the transcription cycle than otherwise possible. The individual subunits of M. jannaschii enzyme are easily expressed and purified from heterologous expression systems. Forming functional RNA polymerase involves simply combining the different subunits under denaturing conditions and slowly removing the denaturant.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 13 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Netherlands 1 8%
Unknown 12 92%

Demographic breakdown

Readers by professional status Count As %
Professor > Associate Professor 3 23%
Student > Ph. D. Student 3 23%
Researcher 2 15%
Student > Doctoral Student 1 8%
Student > Master 1 8%
Other 0 0%
Unknown 3 23%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 6 46%
Agricultural and Biological Sciences 4 31%
Unknown 3 23%