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Bacterial Transcriptional Control

Overview of attention for book
Cover of 'Bacterial Transcriptional Control'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Mapping the Escherichia coli Transcription Elongation Complex with Exonuclease III
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    Chapter 2 Purification of Bacterial RNA Polymerase: Tools and Protocols
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    Chapter 3 Monitoring Translocation of Multisubunit RNA Polymerase Along the DNA with Fluorescent Base Analogues
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    Chapter 4 In vitro and in vivo methodologies for studying the sigma 54-dependent transcription.
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    Chapter 5 Methods for the Assembly and Analysis of In Vitro Transcription-Coupled-to-Translation Systems.
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    Chapter 6 Site-Specific Incorporation of Probes into RNA Polymerase by Unnatural-Amino-Acid Mutagenesis and Staudinger–Bertozzi Ligation
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    Chapter 7 Reconstitution of factor-dependent, promoter proximal pausing in Drosophila nuclear extracts.
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    Chapter 8 Direct Competition Assay for Transcription Fidelity
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    Chapter 9 Single-Stranded DNA Aptamers for Functional Probing of Bacterial RNA Polymerase
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    Chapter 10 Biochemical Analysis of Transcription Termination by RNA Polymerase III from Yeast Saccharomyces cerevisiae.
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    Chapter 11 Use of RNA Polymerase Molecular Beacon Assay to Measure RNA Polymerase Interactions with Model Promoter Fragments
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    Chapter 12 Preparation of cDNA libraries for high-throughput RNA sequencing analysis of RNA 5' ends.
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    Chapter 13 In Situ Footprinting of E. coli Transcription Elongation Complex with Chloroacetaldehyde
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    Chapter 14 Using Solutes and Kinetics to Probe Large Conformational Changes in the Steps of Transcription Initiation
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    Chapter 15 Manipulating Archaeal Systems to Permit Analyses of Transcription Elongation-Termination Decisions In Vitro
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    Chapter 16 Purification of active RNA polymerase I from yeast.
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    Chapter 17 Transcription in Archaea: Preparation of Methanocaldococcus jannaschii Transcription Machinery.
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    Chapter 18 Transcription in Archaea: In Vitro Transcription Assays for mjRNAP.
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    Chapter 19 Experimental Analysis of hFACT Action During Pol II Transcription In Vitro
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    Chapter 20 ChIP-Seq for Genome-Scale Analysis of Bacterial DNA-Binding Proteins.
Attention for Chapter 20: ChIP-Seq for Genome-Scale Analysis of Bacterial DNA-Binding Proteins.
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  • Good Attention Score compared to outputs of the same age and source (70th percentile)

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Chapter title
ChIP-Seq for Genome-Scale Analysis of Bacterial DNA-Binding Proteins.
Chapter number 20
Book title
Bacterial Transcriptional Control
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2392-2_20
Pubmed ID
Book ISBNs
978-1-4939-2391-5, 978-1-4939-2392-2
Authors

Richard P Bonocora, Joseph T Wade, Bonocora RP, Wade JT, Richard P. Bonocora, Joseph T. Wade, Bonocora, Richard P., Wade, Joseph T.

Abstract

Protein-DNA interactions are central to many basic biological processes, including transcription regulation, DNA replication, and DNA repair. Chromatin Immunoprecipitation (ChIP) is used to determine the position and strength of protein-DNA interactions in vivo. Coupling ChIP with microarrays (ChIP-chip), and more recently with deep sequencing (ChIP-seq), has allowed genome-wide profiling of DNA binding events in vivo. In this chapter we outline the steps to generate ChIP-seq libraries from bacterial samples and briefly discuss basic analysis of the data.

X Demographics

X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 37 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 3%
Unknown 36 97%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 11 30%
Student > Bachelor 8 22%
Researcher 6 16%
Student > Doctoral Student 2 5%
Student > Master 2 5%
Other 1 3%
Unknown 7 19%
Readers by discipline Count As %
Agricultural and Biological Sciences 10 27%
Biochemistry, Genetics and Molecular Biology 9 24%
Immunology and Microbiology 6 16%
Business, Management and Accounting 1 3%
Veterinary Science and Veterinary Medicine 1 3%
Other 2 5%
Unknown 8 22%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 21 July 2016.
All research outputs
#14,215,235
of 22,789,076 outputs
Outputs from Methods in molecular biology
#4,177
of 13,096 outputs
Outputs of similar age
#186,634
of 352,984 outputs
Outputs of similar age from Methods in molecular biology
#268
of 996 outputs
Altmetric has tracked 22,789,076 research outputs across all sources so far. This one is in the 35th percentile – i.e., 35% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,096 research outputs from this source. They receive a mean Attention Score of 3.4. This one has gotten more attention than average, scoring higher than 64% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 352,984 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 44th percentile – i.e., 44% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 996 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 70% of its contemporaries.