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Plant Epigenetics

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Cover of 'Plant Epigenetics'

Table of Contents

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    Book Overview
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    Chapter 1 Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA Binding Analyses in Arabidopsis.
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    Chapter 2 Chromatin Conformation Capture-Based Analysis of Nuclear Architecture.
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    Chapter 3 Meta-analysis of Genome-Wide Chromatin Data.
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    Chapter 4 Localization of miRNAs by In Situ Hybridization in Plants Using Conventional Oligonucleotide Probes.
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    Chapter 5 The Combined Bisulfite Restriction Analysis (COBRA) Assay for the Analysis of Locus-Specific Changes in Methylation Patterns.
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    Chapter 6 Analysis of Global Genome Methylation Using the Cytosine-Extension Assay.
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    Chapter 7 In Situ Analysis of DNA Methylation in Plants.
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    Chapter 8 Plant Epigenetics
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    Chapter 9 Analysis of DNA Cytosine Methylation Patterns Using Methylation-Sensitive Amplification Polymorphism (MSAP).
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    Chapter 10 Differentially Methylated Region-Representational Difference Analysis (DMR-RDA): A Powerful Method to Identify DMRs in Uncharacterized Genomes.
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    Chapter 11 Analysis of Small RNA Populations Using Hybridization to DNA Tiling Arrays.
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    Chapter 12 Northern Blotting Techniques for Small RNAs.
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    Chapter 13 Stem-Loop qRT-PCR for the Detection of Plant microRNAs.
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    Chapter 14 Profiling New Small RNA Sequences.
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    Chapter 15 Small RNA Library Preparation and Illumina Sequencing in Plants.
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    Chapter 16 Bioinformatics Analysis of Small RNA Transcriptomes: The Detailed Workflow.
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    Chapter 17 Increasing a Stable Transformation Efficiency of Arabidopsis by Manipulating the Endogenous Gene Expression Using Virus-Induced Gene Silencing.
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    Chapter 18 The Random Oligonucleotide-Primed Synthesis Assay for the Quantification of DNA Strand Breaks.
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    Chapter 19 Profiling Transposable Elements and Their Epigenetic Effects in Non-model Species.
Attention for Chapter 17: Increasing a Stable Transformation Efficiency of Arabidopsis by Manipulating the Endogenous Gene Expression Using Virus-Induced Gene Silencing.
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Chapter title
Increasing a Stable Transformation Efficiency of Arabidopsis by Manipulating the Endogenous Gene Expression Using Virus-Induced Gene Silencing.
Chapter number 17
Book title
Plant Epigenetics
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4899-7708-3_17
Pubmed ID
Book ISBNs
978-1-4899-7706-9, 978-1-4899-7708-3
Authors

Andriy Bilichak, Igor Kovalchuk

Editors

Igor Kovalchuk

Abstract

Virus-induced gene silencing (VIGS) is a powerful epigenetic tool that allows in a relatively short period of time to down-regulate the expression of an endogenous gene in infected plants for either monitoring the resulting phenotype or enhancing/modifying a particular trait associated with the gene. Here, we describe the utilization of Tobacco rattle virus (TRV) as a vector for the VIGS technique in Arabidopsis plants. The unique ability of TRV to infect both somatic tissues and gametes allows deciphering the role of genes in these tissues simultaneously. As an example, we demonstrate the utilization of TRV to down-regulate the expression of AGO2 and NRPD1a genes in ovules of Arabidopsis plants in order to boost the stable transformation efficiency by floral dip.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 10 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 30%
Student > Master 2 20%
Student > Bachelor 1 10%
Student > Doctoral Student 1 10%
Researcher 1 10%
Other 0 0%
Unknown 2 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 4 40%
Agricultural and Biological Sciences 4 40%
Unknown 2 20%