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Plant Epigenetics

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Cover of 'Plant Epigenetics'

Table of Contents

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    Book Overview
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    Chapter 1 Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA Binding Analyses in Arabidopsis.
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    Chapter 2 Chromatin Conformation Capture-Based Analysis of Nuclear Architecture.
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    Chapter 3 Meta-analysis of Genome-Wide Chromatin Data.
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    Chapter 4 Localization of miRNAs by In Situ Hybridization in Plants Using Conventional Oligonucleotide Probes.
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    Chapter 5 The Combined Bisulfite Restriction Analysis (COBRA) Assay for the Analysis of Locus-Specific Changes in Methylation Patterns.
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    Chapter 6 Analysis of Global Genome Methylation Using the Cytosine-Extension Assay.
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    Chapter 7 In Situ Analysis of DNA Methylation in Plants.
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    Chapter 8 Plant Epigenetics
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    Chapter 9 Analysis of DNA Cytosine Methylation Patterns Using Methylation-Sensitive Amplification Polymorphism (MSAP).
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    Chapter 10 Differentially Methylated Region-Representational Difference Analysis (DMR-RDA): A Powerful Method to Identify DMRs in Uncharacterized Genomes.
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    Chapter 11 Analysis of Small RNA Populations Using Hybridization to DNA Tiling Arrays.
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    Chapter 12 Northern Blotting Techniques for Small RNAs.
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    Chapter 13 Stem-Loop qRT-PCR for the Detection of Plant microRNAs.
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    Chapter 14 Profiling New Small RNA Sequences.
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    Chapter 15 Small RNA Library Preparation and Illumina Sequencing in Plants.
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    Chapter 16 Bioinformatics Analysis of Small RNA Transcriptomes: The Detailed Workflow.
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    Chapter 17 Increasing a Stable Transformation Efficiency of Arabidopsis by Manipulating the Endogenous Gene Expression Using Virus-Induced Gene Silencing.
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    Chapter 18 The Random Oligonucleotide-Primed Synthesis Assay for the Quantification of DNA Strand Breaks.
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    Chapter 19 Profiling Transposable Elements and Their Epigenetic Effects in Non-model Species.
Attention for Chapter 15: Small RNA Library Preparation and Illumina Sequencing in Plants.
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Chapter title
Small RNA Library Preparation and Illumina Sequencing in Plants.
Chapter number 15
Book title
Plant Epigenetics
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4899-7708-3_15
Pubmed ID
Book ISBNs
978-1-4899-7706-9, 978-1-4899-7708-3
Authors

Andriy Bilichak, Andrey Golubov, Igor Kovalchuk

Editors

Igor Kovalchuk

Abstract

The discovery of small RNAs in plants and animals almost two decades ago attracted a significant interest towards epigenetic regulation of gene expression and the practical implementation of the gained knowledge in applied studies. New and sometimes unexpected functions have been ascribed to sRNAs almost every couple of years since their discovery, hence indicating that the complete role of sRNAs in plant and animal physiology is still barely understood. Next-generation sequencing technologies allow to generate high-resolution profiles of sRNAs for the consequent analysis and possibly to discover novel functions of sRNAs. In this chapter, we provide brief guidelines for sRNA library preparation in plants and a practical approach that can be implemented to overcome possible difficulties with sequencing library generation.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 11 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 11 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 4 36%
Student > Postgraduate 2 18%
Student > Ph. D. Student 2 18%
Librarian 1 9%
Student > Master 1 9%
Other 1 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 6 55%
Biochemistry, Genetics and Molecular Biology 3 27%
Arts and Humanities 1 9%
Immunology and Microbiology 1 9%