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Plant Epigenetics

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Cover of 'Plant Epigenetics'

Table of Contents

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    Book Overview
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    Chapter 1 Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA Binding Analyses in Arabidopsis.
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    Chapter 2 Chromatin Conformation Capture-Based Analysis of Nuclear Architecture.
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    Chapter 3 Meta-analysis of Genome-Wide Chromatin Data.
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    Chapter 4 Localization of miRNAs by In Situ Hybridization in Plants Using Conventional Oligonucleotide Probes.
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    Chapter 5 The Combined Bisulfite Restriction Analysis (COBRA) Assay for the Analysis of Locus-Specific Changes in Methylation Patterns.
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    Chapter 6 Analysis of Global Genome Methylation Using the Cytosine-Extension Assay.
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    Chapter 7 In Situ Analysis of DNA Methylation in Plants.
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    Chapter 8 Plant Epigenetics
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    Chapter 9 Analysis of DNA Cytosine Methylation Patterns Using Methylation-Sensitive Amplification Polymorphism (MSAP).
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    Chapter 10 Differentially Methylated Region-Representational Difference Analysis (DMR-RDA): A Powerful Method to Identify DMRs in Uncharacterized Genomes.
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    Chapter 11 Analysis of Small RNA Populations Using Hybridization to DNA Tiling Arrays.
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    Chapter 12 Northern Blotting Techniques for Small RNAs.
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    Chapter 13 Stem-Loop qRT-PCR for the Detection of Plant microRNAs.
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    Chapter 14 Profiling New Small RNA Sequences.
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    Chapter 15 Small RNA Library Preparation and Illumina Sequencing in Plants.
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    Chapter 16 Bioinformatics Analysis of Small RNA Transcriptomes: The Detailed Workflow.
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    Chapter 17 Increasing a Stable Transformation Efficiency of Arabidopsis by Manipulating the Endogenous Gene Expression Using Virus-Induced Gene Silencing.
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    Chapter 18 The Random Oligonucleotide-Primed Synthesis Assay for the Quantification of DNA Strand Breaks.
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    Chapter 19 Profiling Transposable Elements and Their Epigenetic Effects in Non-model Species.
Attention for Chapter 1: Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA Binding Analyses in Arabidopsis.
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Chapter title
Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA Binding Analyses in Arabidopsis.
Chapter number 1
Book title
Plant Epigenetics
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4899-7708-3_1
Pubmed ID
Book ISBNs
978-1-4899-7706-9, 978-1-4899-7708-3
Authors

Wanhui You, Stéphane Pien, Ueli Grossniklaus

Editors

Igor Kovalchuk

Abstract

Epigenetic control of plant development via histone modifications is involved in different processes ranging from embryonic development, vegetative development, flowering time control, floral organ development, to pollen tube growth. The identification of an increasing number of epigenetically regulated processes was greatly advanced by methods allowing the survey of genome-wide histone modifications and chromatin-protein interactions. However, genome-wide approaches are too broad to access in detail a large number of histone modifications taking place at a single locus. Here, we provide a robust chromatin immunoprecipitation (ChIP) protocol, allowing in vivo analyses of multiple chromatin modifications and binding of histone modifiers in different plant organs and tissues. This method is quantitative and provides a way to study the dynamic state of chromatin during plant development and also in response to different environmental stimuli.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 15 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 15 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 5 33%
Student > Ph. D. Student 3 20%
Student > Master 3 20%
Student > Bachelor 2 13%
Other 1 7%
Other 1 7%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 7 47%
Agricultural and Biological Sciences 7 47%
Nursing and Health Professions 1 7%