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DNA Nanotechnology

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Cover of 'DNA Nanotechnology'

Table of Contents

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    Book Overview
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    Chapter 1 DNA Nanotechnology: From the Pub to Information-Based Chemistry
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    Chapter 2 The Synthesis of Designer DNA
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    Chapter 3 Synthesis of DNA-Based Nanowires
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    Chapter 4 Preparation of Anti-miR PNAs for Drug Development and Nanomedicine
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    Chapter 5 Loading of PNA and Other Molecular Payloads on Inorganic Nanostructures for Theranostics
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    Chapter 6 Design and Characterization of pH-Triggered DNA Nanoswitches and Nanodevices Based on DNA Triplex Structures
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    Chapter 7 Characterizing Surface-Immobilized DNA Structures and Devices Using a Quartz Crystal Microbalance with Dissipation Monitoring (QCM-D)
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    Chapter 8 Hybridization Chain Reaction Design and Biosensor Implementation
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    Chapter 9 Ultrasensitive Detection of Metal Ions with DNA Nanostructure
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    Chapter 10 Spatially Resolved Peptide-DNA Nanoassemblages for Biomarker Detection: A Synergy of DNA-Directed Immobilization and Nanografting
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    Chapter 11 LSPR Detection of Nucleic Acids on Nanoparticle Monolayers
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    Chapter 12 DNA-Templated Silver Nanoclusters for DNA Methylation Detection
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    Chapter 13 Selection of Structure-Switching DNA Aptamers Binding Soluble Small Molecules and SPR Validation of Enrichment
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    Chapter 14 Dielectrophoretic Stretching of DNA
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    Chapter 15 A Practical Guide to Molecular Dynamics Simulations of DNA Origami Systems
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    Chapter 16 Single-Molecule Patterning via DNA Nanostructure Assembly: A Reusable Platform
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    Chapter 17 Directed Protein Adsorption Through DNA Origami Masks
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    Chapter 18 DNA Origami Structures Interfaced to Inorganic Nanodevices
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    Chapter 19 Tuning Gold Nanoparticles Plasmonic Properties by DNA Nanotechnology
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    Chapter 20 DNA-Assisted Molecular Lithography
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    Chapter 21 Constructing Free Energy Landscapes of Nucleic Acid Hairpin Unfolding
Attention for Chapter 15: A Practical Guide to Molecular Dynamics Simulations of DNA Origami Systems
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Chapter title
A Practical Guide to Molecular Dynamics Simulations of DNA Origami Systems
Chapter number 15
Book title
DNA Nanotechnology
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-8582-1_15
Pubmed ID
Book ISBNs
978-1-4939-8581-4, 978-1-4939-8582-1
Authors

Jejoong Yoo, Chen-Yu Li, Scott Michael Slone, Christopher Maffeo, Aleksei Aksimentiev, Yoo, Jejoong, Li, Chen-Yu, Slone, Scott Michael, Maffeo, Christopher, Aksimentiev, Aleksei

Abstract

The DNA origami method exploits the self-assembly property of nucleic acids to build diverse nanoscale systems. The all-atom molecular dynamics (MD) method has emerged as a powerful computational tool for atomic-resolution characterization of the in situ structure and physical properties of DNA origami objects. This chapter provides step-by-step instructions for building atomic-scale models of DNA origami systems, using the MD method to simulate the models, and performing basic analyses of the resulting MD trajectories.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 40 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 40 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 13 33%
Student > Master 10 25%
Researcher 5 13%
Student > Doctoral Student 2 5%
Professor 1 3%
Other 2 5%
Unknown 7 18%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 8 20%
Chemistry 5 13%
Physics and Astronomy 5 13%
Engineering 4 10%
Agricultural and Biological Sciences 2 5%
Other 5 13%
Unknown 11 28%