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Chapter title |
A Practical Guide to Molecular Dynamics Simulations of DNA Origami Systems
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Chapter number | 15 |
Book title |
DNA Nanotechnology
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Published in |
Methods in molecular biology, January 2018
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DOI | 10.1007/978-1-4939-8582-1_15 |
Pubmed ID | |
Book ISBNs |
978-1-4939-8581-4, 978-1-4939-8582-1
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Authors |
Jejoong Yoo, Chen-Yu Li, Scott Michael Slone, Christopher Maffeo, Aleksei Aksimentiev, Yoo, Jejoong, Li, Chen-Yu, Slone, Scott Michael, Maffeo, Christopher, Aksimentiev, Aleksei |
Abstract |
The DNA origami method exploits the self-assembly property of nucleic acids to build diverse nanoscale systems. The all-atom molecular dynamics (MD) method has emerged as a powerful computational tool for atomic-resolution characterization of the in situ structure and physical properties of DNA origami objects. This chapter provides step-by-step instructions for building atomic-scale models of DNA origami systems, using the MD method to simulate the models, and performing basic analyses of the resulting MD trajectories. |
Mendeley readers
The data shown below were compiled from readership statistics for 40 Mendeley readers of this research output. Click here to see the associated Mendeley record.
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 40 | 100% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 13 | 33% |
Student > Master | 10 | 25% |
Researcher | 5 | 13% |
Student > Doctoral Student | 2 | 5% |
Professor | 1 | 3% |
Other | 2 | 5% |
Unknown | 7 | 18% |
Readers by discipline | Count | As % |
---|---|---|
Biochemistry, Genetics and Molecular Biology | 8 | 20% |
Chemistry | 5 | 13% |
Physics and Astronomy | 5 | 13% |
Engineering | 4 | 10% |
Agricultural and Biological Sciences | 2 | 5% |
Other | 5 | 13% |
Unknown | 11 | 28% |