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Chromosome and Genomic Engineering in Plants

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Cover of 'Chromosome and Genomic Engineering in Plants'

Table of Contents

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    Book Overview
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    Chapter 1 Production of Engineered Minichromosome Vectors via the Introduction of Telomere Sequences
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    Chapter 2 Method for Biolistic Site-Specific Integration in Plants Catalyzed by Bxb1 Integrase
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    Chapter 3 Protocol for In Vitro Stacked Molecules Compatible with In Vivo Recombinase-Mediated Gene Stacking
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    Chapter 4 Chromosome and Genomic Engineering in Plants
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    Chapter 5 One-Step Generation of Chromosomal Rearrangements in Rice
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    Chapter 6 Genome Elimination by Tailswap CenH3: In Vivo Haploid Production in Arabidopsis thaliana
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    Chapter 7 Chromosome and Genomic Engineering in Plants
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    Chapter 8 CRISPR/Cas-Mediated Site-Specific Mutagenesis in Arabidopsis thaliana Using Cas9 Nucleases and Paired Nickases
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    Chapter 9 Chromosome and Genomic Engineering in Plants
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    Chapter 10 Seamless Genome Editing in Rice via Gene Targeting and Precise Marker Elimination
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    Chapter 11 Chromosome and Genomic Engineering in Plants
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    Chapter 12 Chromosome and Genomic Engineering in Plants
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    Chapter 13 Image Analysis of DNA Fiber and Nucleus in Plants
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    Chapter 14 Chromosome and Genomic Engineering in Plants
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    Chapter 15 Chromosome and Genomic Engineering in Plants
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    Chapter 16 Chromosome and Genomic Engineering in Plants
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    Chapter 17 Mapping of T-DNA and Ac/Ds by TAIL-PCR to Analyze Chromosomal Rearrangements
Attention for Chapter 5: One-Step Generation of Chromosomal Rearrangements in Rice
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Chapter title
One-Step Generation of Chromosomal Rearrangements in Rice
Chapter number 5
Book title
Chromosome and Genomic Engineering in Plants
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-4931-1_5
Pubmed ID
Book ISBNs
978-1-4939-4929-8, 978-1-4939-4931-1
Authors

Minoru Murata, Asaka Kanatani, Kazunari Kashihara

Abstract

The combination of the DNA sequence-specific recombination system Cre/LoxP and the DNA transposon system Activator (Ac)/Dissociation (Ds) has been used for insertional and deletional mutagenesis, as well as for the generation of artificial ring chromosomes in model plants such as Arabidopsis and tobacco. However, it takes a long time to complete this process, even in Arabidopsis. To overcome this issue, a new binary vector, pDLHC, has been developed to induce chromosomal rearrangements for a short time in rice. pDLHC has been found to be effective in the induction of deletions between two LoxPs in the T2 generation of "Nihon bare" expressing Ac TPase. pDLHC has potential for the efficient generation of various types of chromosomal rearrangements including deletions, inversions, translocations and artificial ring chromosomes in plants, and the detailed protocol for rice is described here.