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Proteomic Profiling

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Cover of 'Proteomic Profiling'

Table of Contents

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    Book Overview
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    Chapter 1 Mechanical/Physical Methods of Cell Distribution and Tissue Homogenization
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    Chapter 2 Sample Preservation Through Heat Stabilization of Proteins: Principles and Examples
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    Chapter 3 Isolating Peripheral Lymphocytes by Density Gradient Centrifugation and Magnetic Cell Sorting
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    Chapter 4 Investigating the Adipose Tissue Secretome: A Protocol to Generate High-Quality Samples Appropriate for Comprehensive Proteomic Profiling
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    Chapter 5 Methods for proteomics-based analysis of the human muscle secretome using an in vitro exercise model.
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    Chapter 6 Urinary Pellet Sample Preparation for Shotgun Proteomic Analysis of Microbial Infection and Host–Pathogen Interactions
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    Chapter 7 A Protocol for the Parallel Isolation of Intact Mitochondria from Rat Liver, Kidney, Heart, and Brain
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    Chapter 8 Isolation of Mitochondria from Cultured Cells and Liver Tissue Biopsies for Molecular and Biochemical Analyses
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    Chapter 9 Dynamic Range Compression with ProteoMiner™: Principles and Examples
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    Chapter 10 Qualitative and Quantitative Proteomic Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Tissue
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    Chapter 11 Full-Length Protein Extraction Protocols and Gel-Based Downstream Applications in Formalin-Fixed Tissue Proteomics
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    Chapter 12 Enrichment of Low-Abundant Protein Targets by Immunoprecipitation Upstream of Mass Spectrometry
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    Chapter 13 Principles of Protein Labeling Techniques
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    Chapter 14 Isolation of extracellular vesicles for proteomic profiling.
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    Chapter 15 A Protocol for Exosome Isolation and Characterization: Evaluation of Ultracentrifugation, Density-Gradient Separation, and Immunoaffinity Capture Methods
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    Chapter 16 Chloroplast Isolation and Affinity Chromatography for Enrichment of Low-Abundant Proteins in Complex Proteomes
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    Chapter 17 Depletion of RuBisCO Protein Using the Protamine Sulfate Precipitation Method
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    Chapter 18 Step-by-Step Preparation of Proteins for Mass Spectrometric Analysis
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    Chapter 19 Identification of Protein N-Termini Using TMPP or Dimethyl Labeling and Mass Spectrometry
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    Chapter 20 Optimization of Cell Lysis and Protein Digestion Protocols for Protein Analysis by LC-MS/MS
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    Chapter 21 Comprehensive Protocol to Simultaneously Study Protein Phosphorylation, Acetylation, and N-Linked Sialylated Glycosylation
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    Chapter 22 Protein Profiling and Phosphoprotein Analysis by Isoelectric Focusing
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    Chapter 23 Principles and Examples of Gel-Based Approaches for Phosphoprotein Analysis
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    Chapter 24 Neutral Phosphate-Affinity SDS-PAGE System for Profiling of Protein Phosphorylation
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    Chapter 25 Proteomic Profiling
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    Chapter 26 In-Gel Peptide IEF Sample Preparation for LC/MS Analysis
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    Chapter 27 Proteomic Profiling
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    Chapter 28 2-D Western Blotting for Evaluation of Antibodies Developed for Detection of Host Cell Protein
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    Chapter 29 Free Flow Electrophoresis for Separation of Native Membrane Protein Complexes
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    Chapter 30 Three-Dimensional Electrophoresis for Quantitative Profiling of Complex Proteomes
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    Chapter 31 A Bead-Based Multiplex Sandwich Immunoassay to Assess the Abundance and Posttranslational Modification State of β-Catenin
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    Chapter 32 Identification of SUMO E3 Ligase-Specific Substrates Using the HuProt Human Proteome Microarray.
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    Chapter 33 Amyloid-binding proteins: affinity-based separation, proteomic identification, and optical biosensor validation.
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    Chapter 34 Proteomic profiling by nanomaterials-based matrix-assisted laser desorption/ionization mass spectrometry for high-resolution data and novel protein information directly from biological samples.
Attention for Chapter 8: Isolation of Mitochondria from Cultured Cells and Liver Tissue Biopsies for Molecular and Biochemical Analyses
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Chapter title
Isolation of Mitochondria from Cultured Cells and Liver Tissue Biopsies for Molecular and Biochemical Analyses
Chapter number 8
Book title
Proteomic Profiling
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2550-6_8
Pubmed ID
Book ISBNs
978-1-4939-2549-0, 978-1-4939-2550-6
Authors

Sabine Schmitt, Carola Eberhagen, Susanne Weber, Michaela Aichler, Hans Zischka

Abstract

We recently reported a new method to isolate functionally intact mitochondria from cell culture and small tissue samples (Schmitt et al., Anal Biochem 443(1):66-74, 2013). This method comprises a semi-automated cell rupture, termed pump controlled cell rupture system (PCC), which can be precisely adjusted to the specific cellular source of isolation and which can be tightly controlled (Schmitt et al., Anal Biochem 443(1):66-74, 2013). Here we provide a detailed hands-on protocol of this PCC method which results in an efficient cell breakage but preserving the mitochondrial integrity. Upon subsequent purification steps, the obtained mitochondrial fraction meets the quality and purity required for molecular analyses, e.g. proteomic comparisons, as well as for biochemical analyses, e.g. determination of diverse enzymatic activities.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 21 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 1 5%
Unknown 20 95%

Demographic breakdown

Readers by professional status Count As %
Student > Master 4 19%
Student > Ph. D. Student 4 19%
Professor > Associate Professor 2 10%
Student > Bachelor 2 10%
Researcher 2 10%
Other 2 10%
Unknown 5 24%
Readers by discipline Count As %
Agricultural and Biological Sciences 8 38%
Biochemistry, Genetics and Molecular Biology 2 10%
Neuroscience 2 10%
Computer Science 1 5%
Pharmacology, Toxicology and Pharmaceutical Science 1 5%
Other 2 10%
Unknown 5 24%