Promoter Associated RNA

Chapter 1 ChIP-seq for the Identification of Functional Elements in the Human Genome

Chapter 2 Identification of Candidate Functional Elements in the Genome from ChIP-seq Data

Chapter 3 GRO-seq, A Tool for Identification of Transcripts Regulating Gene Expression

Chapter 4 NanoCAGE: A Method for the Analysis of Coding and Noncoding 5′-Capped Transcriptomes

Chapter 5 Deep Cap Analysis of Gene Expression (CAGE): Genome-Wide Identification of Promoters, Quantification of Their Activity, and Transcriptional Network Inference

Chapter 6 Deep-RACE: Comprehensive Search for Novel ncRNAs Associated to a Specific Locus

Chapter 7 In Silico Prediction of RNA Secondary Structure

Chapter 8 Computational Prediction of RNA-Protein Interactions

Chapter 9 Isolation of Nuclear RNA-Associated Protein Complexes

Chapter 10 Identification of Long Noncoding RNAs Associated to Human Disease Susceptibility

Chapter 11 Targeting Promoter-Associated RNAs by siRNAs

Chapter 12 RNA-FISH to Study Regulatory RNA at the Site of Transcription

Chapter 13 Detection and Characterization of R Loop Structures

Chapter 14 Induction of Transcriptional Gene Silencing by Expression of shRNA Directed to c-Myc P2 Promoter in Hepatocellular Carcinoma by Tissue-Specific Virosomal Delivery

Chapter 15 Targeting Promoter-Associated Noncoding RNA In Vivo

Chapter 16 Manipulation of Promoter-Associated Noncoding RNAs in Mouse Early Embryos for Controlling Sequence-Specific Epigenetic Status