| Chapter title |
Deep Cap Analysis of Gene Expression (CAGE): Genome-Wide Identification of Promoters, Quantification of Their Activity, and Transcriptional Network Inference
|
|---|---|
| Chapter number | 5 |
| Book title |
Promoter Associated RNA
|
| Published in |
Methods in molecular biology, March 2017
|
| DOI | 10.1007/978-1-4939-6716-2_5 |
| Pubmed ID | |
| Book ISBNs |
978-1-4939-6714-8, 978-1-4939-6716-2
|
| Authors |
Fort, Alexandre, Fish, Richard J., Alexandre Fort, Richard J. Fish |
| Editors |
Sara Napoli |
| Abstract |
Among the most significant findings of the post-genomic era, the discovery of pervasive transcription of mammalian genomes has tremendously modified our understanding of the genome output seen as RNA molecules. The increased focus on non-protein-coding genomic regions together with concomitant technological innovations has led to rapid discovery of numerous noncoding transcripts (ncRNAs). Biological relevance and functional roles of the vast majority of these ncRNAs remain largely unknown.The cap analysis of gene expression (CAGE) technology allows accurate transcript detection and quantification without relying on preexisting transcript models. In combination with complementary data sets, generated using other technologies, it has been shown as an efficient approach for exploring transcriptome complexity.Here, we describe the use of CAGE for the identification of novel noncoding transcripts in mammalian cells providing detailed information for basic data processing and advanced bioinformatics analyses. |
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Demographic breakdown
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Mendeley readers
Geographical breakdown
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|---|---|---|
| Unknown | 28 | 100% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Student > Ph. D. Student | 7 | 25% |
| Researcher | 4 | 14% |
| Student > Master | 4 | 14% |
| Student > Doctoral Student | 3 | 11% |
| Other | 3 | 11% |
| Other | 3 | 11% |
| Unknown | 4 | 14% |
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| Arts and Humanities | 1 | 4% |
| Medicine and Dentistry | 1 | 4% |
| Other | 0 | 0% |
| Unknown | 6 | 21% |