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Hidden Markov Models

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Cover of 'Hidden Markov Models'

Table of Contents

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    Book Overview
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    Chapter 1 Introduction to Hidden Markov Models and Its Applications in Biology
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    Chapter 2 HMMs in Protein Fold Classification
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    Chapter 3 Application of Hidden Markov Models in Biomolecular Simulations
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    Chapter 4 Predicting Beta Barrel Transmembrane Proteins Using HMMs
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    Chapter 5 Predicting Alpha Helical Transmembrane Proteins Using HMMs
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    Chapter 6 Self-Organizing Hidden Markov Model Map (SOHMMM): Biological Sequence Clustering and Cluster Visualization
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    Chapter 7 Analyzing Single Molecule FRET Trajectories Using HMM
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    Chapter 8 Modelling ChIP-seq Data Using HMMs
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    Chapter 9 Hidden Markov Models in Bioinformatics: SNV Inference from Next Generation Sequence
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    Chapter 10 Computationally Tractable Multivariate HMM in Genome-Wide Mapping Studies
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    Chapter 11 Hidden Markov Models in Population Genomics
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    Chapter 12 Differential Gene Expression (DEX) and Alternative Splicing Events (ASE) for Temporal Dynamic Processes Using HMMs and Hierarchical Bayesian Modeling Approaches
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    Chapter 13 Finding RNA–Protein Interaction Sites Using HMMs
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    Chapter 14 Automated Estimation of Mouse Social Behaviors Based on a Hidden Markov Model
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    Chapter 15 Modeling Movement Primitives with Hidden Markov Models for Robotic and Biomedical Applications
Attention for Chapter 15: Modeling Movement Primitives with Hidden Markov Models for Robotic and Biomedical Applications
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Chapter title
Modeling Movement Primitives with Hidden Markov Models for Robotic and Biomedical Applications
Chapter number 15
Book title
Hidden Markov Models
Published in
Methods in molecular biology, February 2017
DOI 10.1007/978-1-4939-6753-7_15
Pubmed ID
Book ISBNs
978-1-4939-6751-3, 978-1-4939-6753-7
Authors

Michelle Karg, Dana Kulić

Editors

David R. Westhead, M. S. Vijayabaskar

Abstract

Movement primitives are elementary motion units and can be combined sequentially or simultaneously to compose more complex movement sequences. A movement primitive timeseries consist of a sequence of motion phases. This progression through a set of motion phases can be modeled by Hidden Markov Models (HMMs). HMMs are stochastic processes that model time series data as the evolution of a hidden state variable through a discrete set of possible values, where each state value is associated with an observation (emission) probability. Each motion phase is represented by one of the hidden states and the sequential order by their transition probabilities. The observations of the MP-HMM are the sensor measurements of the human movement, for example, motion capture or inertial measurements. The emission probabilities are modeled as Gaussians. In this chapter, the MP-HMM modeling framework is described and applications to motion recognition and motion performance assessment are discussed. The selected applications include parametric MP-HMMs for explicitly modeling variability in movement performance and the comparison of MP-HMMs based on the loglikelihood, the Kullback-Leibler divergence, the extended HMM-based F-statistic, and gait-specific reference-based measures.

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Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Colombia 1 10%
Unknown 9 90%

Demographic breakdown

Readers by professional status Count As %
Other 1 10%
Student > Bachelor 1 10%
Professor 1 10%
Student > Ph. D. Student 1 10%
Researcher 1 10%
Other 1 10%
Unknown 4 40%
Readers by discipline Count As %
Engineering 4 40%
Economics, Econometrics and Finance 1 10%
Agricultural and Biological Sciences 1 10%
Unknown 4 40%