Chapter title |
Bioinformatics Analysis of PTM-Modified Protein Interaction Networks and Complexes
|
---|---|
Chapter number | 15 |
Book title |
Protein Bioinformatics
|
Published in |
Methods in molecular biology, February 2017
|
DOI | 10.1007/978-1-4939-6783-4_15 |
Pubmed ID | |
Book ISBNs |
978-1-4939-6781-0, 978-1-4939-6783-4
|
Authors |
Jonathan Woodsmith, Ulrich Stelzl, Arunachalam Vinayagam |
Editors |
Cathy H. Wu, Cecilia N. Arighi, Karen E. Ross |
Abstract |
Normal cellular functioning is maintained by macromolecular machines that control both core and specialized molecular tasks. These machines are in large part multi-subunit protein complexes that undergo regulation at multiple levels, from expression of requisite components to a vast array of post-translational modifications (PTMs). PTMs such as phosphorylation, ubiquitination, and acetylation currently number more than 200,000 in the human proteome and function within all molecular pathways. Here we provide a framework for systematically studying these PTMs in the context of global protein-protein interaction networks. This analytical framework allows insight into which functions specific PTMs tend to cluster in, and furthermore which complexes either single or multiple PTM signaling pathways converge on. |
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