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Protein Bioinformatics

Overview of attention for book
Cover of 'Protein Bioinformatics'

Table of Contents

  1. Altmetric Badge
    Book Overview
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    Chapter 1 Protein Bioinformatics Databases and Resources
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    Chapter 2 UniProt Protein Knowledgebase
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    Chapter 3 Tutorial on Protein Ontology Resources
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    Chapter 4 CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences
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    Chapter 5 Structure-Based Virtual Screening
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    Chapter 6 Bioinformatics Analysis of Protein Phosphorylation in Plant Systems Biology Using P3DB
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    Chapter 7 Navigating the Glycome Space and Connecting the Glycoproteome
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    Chapter 8 Impact of Nonsynonymous Single-Nucleotide Variations on Post-Translational Modification Sites in Human Proteins
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    Chapter 9 Analysis of Cysteine Redox Post-Translational Modifications in Cell Biology and Drug Pharmacology
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    Chapter 10 Analysis of Protein Phosphorylation and Its Functional Impact on Protein–Protein Interactions via Text Mining of the Scientific Literature
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    Chapter 11 Functional Interaction Network Construction and Analysis for Disease Discovery
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    Chapter 12 Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information
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    Chapter 13 NDEx: A Community Resource for Sharing and Publishing of Biological Networks
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    Chapter 14 Bioinformatics Analysis of Functional Associations of PTMs
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    Chapter 15 Bioinformatics Analysis of PTM-Modified Protein Interaction Networks and Complexes
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    Chapter 16 iPTMnet: Integrative Bioinformatics for Studying PTM Networks
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    Chapter 17 Protein Identification from Tandem Mass Spectra by Database Searching
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    Chapter 18 Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite
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    Chapter 19 Mapping Biological Networks from Quantitative Data-Independent Acquisition Mass Spectrometry: Data to Knowledge Pipelines
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    Chapter 20 Annotation of Alternatively Spliced Proteins and Transcripts with Protein-Folding Algorithms and Isoform-Level Functional Networks
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    Chapter 21 Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis
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    Chapter 22 Cross-Species PTM Mapping from Phosphoproteomic Data
Attention for Chapter 4: CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences
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  • Above-average Attention Score compared to outputs of the same age and source (63rd percentile)

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Chapter title
CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences
Chapter number 4
Book title
Protein Bioinformatics
Published in
Methods in molecular biology, February 2017
DOI 10.1007/978-1-4939-6783-4_4
Pubmed ID
Book ISBNs
978-1-4939-6781-0, 978-1-4939-6783-4
Authors

Natalie L. Dawson, Ian Sillitoe, Jonathan G. Lees, Su Datt Lam, Christine A. Orengo

Editors

Cathy H. Wu, Cecilia N. Arighi, Karen E. Ross

Abstract

This chapter describes the generation of the data in the CATH-Gene3D online resource and how it can be used to study protein domains and their evolutionary relationships. Methods will be presented for: comparing protein structures, recognizing homologs, predicting domain structures within protein sequences, and subclassifying superfamilies into functionally pure families, together with a guide on using the webpages.

X Demographics

X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 29 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 29 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 6 21%
Student > Bachelor 6 21%
Student > Master 5 17%
Researcher 2 7%
Other 1 3%
Other 4 14%
Unknown 5 17%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 8 28%
Agricultural and Biological Sciences 7 24%
Computer Science 6 21%
Unspecified 1 3%
Immunology and Microbiology 1 3%
Other 0 0%
Unknown 6 21%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 01 March 2017.
All research outputs
#15,268,318
of 24,226,848 outputs
Outputs from Methods in molecular biology
#4,487
of 13,632 outputs
Outputs of similar age
#237,587
of 427,915 outputs
Outputs of similar age from Methods in molecular biology
#389
of 1,175 outputs
Altmetric has tracked 24,226,848 research outputs across all sources so far. This one is in the 34th percentile – i.e., 34% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,632 research outputs from this source. They receive a mean Attention Score of 3.5. This one has gotten more attention than average, scoring higher than 63% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 427,915 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 41st percentile – i.e., 41% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,175 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 63% of its contemporaries.