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Light Microscopy

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Cover of 'Light Microscopy'

Table of Contents

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    Book Overview
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    Chapter 1 Introduction to Modern Methods in Light Microscopy
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    Chapter 2 Three-Dimensional Live Imaging of Filamentous Fungi with Light Sheet-Based Fluorescence Microscopy (LSFM)
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    Chapter 3 Light-Sheet Fluorescence Microscopy: Chemical Clearing and Labeling Protocols for Ultramicroscopy
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    Chapter 4 Two-Photon Intravital Microscopy Animal Preparation Protocol to Study Cellular Dynamics in Pathogenesis
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    Chapter 5 Imaging of Brain Slices with a Genetically Encoded Voltage Indicator
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    Chapter 6 FRET Microscopy for Real-Time Visualization of Second Messengers in Living Cells
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    Chapter 7 Imaging the Dynamics of Cell Wall Polymer Deposition in the Unicellular Model Plant, Penium margaritaceum
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    Chapter 8 Targeted Ablation Using Laser Nanosurgery
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    Chapter 9 Sample Preparation and Choice of Fluorophores for Single and Dual Color Photo-Activated Localization Microscopy (PALM) with Bacterial Cells
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    Chapter 10 STED Imaging in Drosophila Brain Slices
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    Chapter 11 Two-Color Total Internal Reflection Fluorescence Microscopy of Exocytosis in Endocrine Cells
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    Chapter 12 Optical Coherence Microscopy
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    Chapter 13 Designing Image Analysis Pipelines in Light Microscopy: A Rational Approach
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    Chapter 14 Automated Analysis of Intracellular Dynamic Processes
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    Chapter 15 Quantitative Image Analysis of Single-Molecule mRNA Dynamics in Living Cells
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    Chapter 16 Analysis of Protein Kinetics Using Fluorescence Recovery After Photobleaching (FRAP)
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    Chapter 17 Fluorescence-Based High-Throughput and Targeted Image Acquisition and Analysis for Phenotypic Screening
Attention for Chapter 14: Automated Analysis of Intracellular Dynamic Processes
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Chapter title
Automated Analysis of Intracellular Dynamic Processes
Chapter number 14
Book title
Light Microscopy
Published in
Methods in molecular biology, March 2017
DOI 10.1007/978-1-4939-6810-7_14
Pubmed ID
Book ISBNs
978-1-4939-6808-4, 978-1-4939-6810-7
Authors

Yao Yao, Ihor Smal, Ilya Grigoriev, Maud Martin, Anna Akhmanova, Erik Meijering

Editors

Yolanda Markaki, Hartmann Harz

Abstract

The study of intracellular dynamic processes is of fundamental importance for understanding a wide variety of diseases and developing effective drugs and therapies. Advanced fluorescence microscopy imaging systems nowadays allow the recording of virtually any type of process in space and time with super-resolved detail and with high sensitivity and specificity. The large volume and high information content of the resulting image data, and the desire to obtain objective, quantitative descriptions and biophysical models of the processes of interest, require a high level of automation in data analysis. Two key tasks in extracting biologically meaningful information about intracellular dynamics from image data are particle tracking and particle trajectory analysis. Here we present state-of-the-art software tools for these tasks and describe how to use them.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 6 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 6 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 1 17%
Student > Ph. D. Student 1 17%
Student > Bachelor 1 17%
Unknown 3 50%
Readers by discipline Count As %
Computer Science 3 50%
Unknown 3 50%