Statistical Genomics
Overview of attention for book
Table of Contents
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Altmetric BadgeBook Overview
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Altmetric BadgeChapter 1 Overview of Sequence Data Formats
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Altmetric BadgeChapter 2 Integrative Exploratory Analysis of Two or More Genomic Datasets
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Altmetric BadgeChapter 3 Study Design for Sequencing Studies
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Altmetric BadgeChapter 4 Genomic Annotation Resources in R/Bioconductor
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Altmetric BadgeChapter 5 The Gene Expression Omnibus Database
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Altmetric BadgeChapter 6 A Practical Guide to The Cancer Genome Atlas (TCGA)
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Altmetric BadgeChapter 7 Working with Oligonucleotide Arrays
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Altmetric BadgeChapter 8 Meta-Analysis in Gene Expression Studies
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Altmetric BadgeChapter 9 Practical Analysis of Genome Contact Interaction Experiments
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Altmetric BadgeChapter 10 Quantitative Comparison of Large-Scale DNA Enrichment Sequencing Data
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Altmetric BadgeChapter 11 Variant Calling From Next Generation Sequence Data
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Altmetric BadgeChapter 12 Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes
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Altmetric BadgeChapter 13 NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets
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Altmetric BadgeChapter 14 Operating on Genomic Ranges Using BEDOPS
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Altmetric BadgeChapter 15 GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality
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Altmetric BadgeChapter 16 Visualizing Genomic Data Using Gviz and Bioconductor
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Altmetric BadgeChapter 17 Introducing Machine Learning Concepts with WEKA
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Altmetric BadgeChapter 18 Experimental Design and Power Calculation for RNA-seq Experiments
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Altmetric BadgeChapter 19 It’s DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR
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