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Statistical Genomics

Overview of attention for book
Cover of 'Statistical Genomics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Overview of Sequence Data Formats
  3. Altmetric Badge
    Chapter 2 Integrative Exploratory Analysis of Two or More Genomic Datasets
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    Chapter 3 Study Design for Sequencing Studies
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    Chapter 4 Genomic Annotation Resources in R/Bioconductor
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    Chapter 5 The Gene Expression Omnibus Database
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    Chapter 6 A Practical Guide to The Cancer Genome Atlas (TCGA)
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    Chapter 7 Working with Oligonucleotide Arrays
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    Chapter 8 Meta-Analysis in Gene Expression Studies
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    Chapter 9 Practical Analysis of Genome Contact Interaction Experiments
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    Chapter 10 Quantitative Comparison of Large-Scale DNA Enrichment Sequencing Data
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    Chapter 11 Variant Calling From Next Generation Sequence Data
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    Chapter 12 Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes
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    Chapter 13 NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets
  15. Altmetric Badge
    Chapter 14 Operating on Genomic Ranges Using BEDOPS
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    Chapter 15 GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality
  17. Altmetric Badge
    Chapter 16 Visualizing Genomic Data Using Gviz and Bioconductor
  18. Altmetric Badge
    Chapter 17 Introducing Machine Learning Concepts with WEKA
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    Chapter 18 Experimental Design and Power Calculation for RNA-seq Experiments
  20. Altmetric Badge
    Chapter 19 It’s DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR
Attention for Chapter 8: Meta-Analysis in Gene Expression Studies
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About this Attention Score

  • Above-average Attention Score compared to outputs of the same age (53rd percentile)
  • Good Attention Score compared to outputs of the same age and source (77th percentile)

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Chapter title
Meta-Analysis in Gene Expression Studies
Chapter number 8
Book title
Statistical Genomics
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3578-9_8
Pubmed ID
Book ISBNs
978-1-4939-3576-5, 978-1-4939-3578-9
Authors

Levi Waldron, Markus Riester, Waldron, Levi, Riester, Markus

Editors

Ewy Mathé, Sean Davis

Abstract

This chapter introduces methods to synthesize experimental results from independent high-throughput genomic experiments, with a focus on adaptation of traditional methods from systematic review of clinical trials and epidemiological studies. First, it reviews methods for identifying, acquiring, and preparing individual patient data for meta-analysis. It then reviews methodology for synthesizing results across studies and assessing heterogeneity, first through outlining of methods and then through a step-by-step case study in identifying genes associated with survival in high-grade serous ovarian cancer.

X Demographics

X Demographics

The data shown below were collected from the profiles of 6 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 41 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 2%
Unknown 40 98%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 12 29%
Researcher 7 17%
Student > Master 4 10%
Student > Doctoral Student 3 7%
Professor > Associate Professor 2 5%
Other 5 12%
Unknown 8 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 13 32%
Agricultural and Biological Sciences 5 12%
Medicine and Dentistry 5 12%
Neuroscience 3 7%
Computer Science 2 5%
Other 1 2%
Unknown 12 29%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 August 2016.
All research outputs
#13,229,909
of 23,314,015 outputs
Outputs from Methods in molecular biology
#3,380
of 13,320 outputs
Outputs of similar age
#182,349
of 396,039 outputs
Outputs of similar age from Methods in molecular biology
#315
of 1,474 outputs
Altmetric has tracked 23,314,015 research outputs across all sources so far. This one is in the 42nd percentile – i.e., 42% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,320 research outputs from this source. They receive a mean Attention Score of 3.4. This one has gotten more attention than average, scoring higher than 73% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 396,039 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 53% of its contemporaries.
We're also able to compare this research output to 1,474 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 77% of its contemporaries.