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Multiple Sequence Alignment Methods

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Cover of 'Multiple Sequence Alignment Methods'

Table of Contents

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    Book Overview
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    Chapter 1 Dynamic Programming
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    Chapter 2 Heuristic Alignment Methods
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    Chapter 3 Objective Functions
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    Chapter 4 Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.
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    Chapter 5 BLAST and FASTA Similarity Searching for Multiple Sequence Alignment
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    Chapter 6 Multiple Sequence Alignment Methods
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    Chapter 7 T-coffee: tree-based consistency objective function for alignment evaluation.
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    Chapter 8 MAFFT: Iterative Refinement and Additional Methods
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    Chapter 9 Multiple Sequence Alignment Methods
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    Chapter 10 Phylogeny-aware alignment with PRANK.
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    Chapter 11 GramAlign: Fast alignment driven by grammar-based phylogeny
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    Chapter 12 Multiple Sequence Alignment with DIALIGN
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    Chapter 13 PicXAA: A Probabilistic Scheme for Finding the Maximum Expected Accuracy Alignment of Multiple Biological Sequences
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    Chapter 14 Multiple Protein Sequence Alignment with MSAProbs
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    Chapter 15 Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé
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    Chapter 16 PRALINE: A Versatile Multiple Sequence Alignment Toolkit
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    Chapter 17 PROMALS3D: Multiple Protein Sequence Alignment Enhanced with Evolutionary and Three-Dimensional Structural Information
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    Chapter 18 MSACompro: Improving Multiple Protein Sequence Alignment by Predicted Structural Features
Attention for Chapter 8: MAFFT: Iterative Refinement and Additional Methods
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Chapter title
MAFFT: Iterative Refinement and Additional Methods
Chapter number 8
Book title
Multiple Sequence Alignment Methods
Published in
Methods in molecular biology, August 2013
DOI 10.1007/978-1-62703-646-7_8
Pubmed ID
Book ISBNs
978-1-62703-645-0, 978-1-62703-646-7
Authors

Kazutaka Katoh, Daron M. Standley, Katoh, Kazutaka, Standley, Daron M.

Editors

David J Russell

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 149 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 1 <1%
United States 1 <1%
Unknown 147 99%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 26 17%
Researcher 24 16%
Student > Master 19 13%
Student > Bachelor 13 9%
Professor > Associate Professor 13 9%
Other 26 17%
Unknown 28 19%
Readers by discipline Count As %
Agricultural and Biological Sciences 42 28%
Biochemistry, Genetics and Molecular Biology 35 23%
Medicine and Dentistry 10 7%
Immunology and Microbiology 6 4%
Environmental Science 6 4%
Other 17 11%
Unknown 33 22%