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Multiple Sequence Alignment Methods

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Cover of 'Multiple Sequence Alignment Methods'

Table of Contents

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    Book Overview
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    Chapter 1 Dynamic Programming
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    Chapter 2 Heuristic Alignment Methods
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    Chapter 3 Objective Functions
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    Chapter 4 Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.
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    Chapter 5 BLAST and FASTA Similarity Searching for Multiple Sequence Alignment
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    Chapter 6 Multiple Sequence Alignment Methods
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    Chapter 7 T-coffee: tree-based consistency objective function for alignment evaluation.
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    Chapter 8 MAFFT: Iterative Refinement and Additional Methods
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    Chapter 9 Multiple Sequence Alignment Methods
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    Chapter 10 Phylogeny-aware alignment with PRANK.
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    Chapter 11 GramAlign: Fast alignment driven by grammar-based phylogeny
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    Chapter 12 Multiple Sequence Alignment with DIALIGN
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    Chapter 13 PicXAA: A Probabilistic Scheme for Finding the Maximum Expected Accuracy Alignment of Multiple Biological Sequences
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    Chapter 14 Multiple Protein Sequence Alignment with MSAProbs
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    Chapter 15 Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé
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    Chapter 16 PRALINE: A Versatile Multiple Sequence Alignment Toolkit
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    Chapter 17 PROMALS3D: Multiple Protein Sequence Alignment Enhanced with Evolutionary and Three-Dimensional Structural Information
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    Chapter 18 MSACompro: Improving Multiple Protein Sequence Alignment by Predicted Structural Features
Attention for Chapter 15: Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé
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Chapter title
Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé
Chapter number 15
Book title
Multiple Sequence Alignment Methods
Published in
Methods in molecular biology, August 2013
DOI 10.1007/978-1-62703-646-7_15
Pubmed ID
Book ISBNs
978-1-62703-645-0, 978-1-62703-646-7
Authors

Kevin Liu, Tandy Warnow, Liu, Kevin, Warnow, Tandy

Editors

David J Russell

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 17 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 17 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 5 29%
Student > Doctoral Student 2 12%
Student > Ph. D. Student 2 12%
Professor > Associate Professor 2 12%
Professor 1 6%
Other 2 12%
Unknown 3 18%
Readers by discipline Count As %
Agricultural and Biological Sciences 5 29%
Computer Science 4 24%
Biochemistry, Genetics and Molecular Biology 2 12%
Engineering 2 12%
Earth and Planetary Sciences 1 6%
Other 0 0%
Unknown 3 18%