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Preface. Bacterial pangenomics.

Overview of attention for book
Cover of 'Preface. Bacterial pangenomics.'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Pulsed Field Gel Electrophoresis and Genome Size Estimates
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    Chapter 2 Comparative analyses of extrachromosomal bacterial replicons, identification of chromids, and experimental evaluation of their indispensability.
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    Chapter 3 Choice of Next-Generation Sequencing Pipelines
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    Chapter 4 The pyrosequencing protocol for bacterial genomes.
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    Chapter 5 Bacterial Metabarcoding by 16S rRNA Gene Ion Torrent Amplicon Sequencing.
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    Chapter 6 The illumina-solexa sequencing protocol for bacterial genomes.
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    Chapter 7 High-throughput phenomics.
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    Chapter 8 Comparative Analysis of Gene Expression: Uncovering Expression Conservation and Divergence Between Salmonella enterica Serovar Typhimurium Strains LT2 and 14028S
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    Chapter 9 Raw sequence data and quality control.
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    Chapter 10 Methods for Assembling Reads and Producing Contigs
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    Chapter 11 Mapping Contigs Using CONTIGuator.
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    Chapter 12 Gene Calling and Bacterial Genome Annotation with BG7.
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    Chapter 13 Defining orthologs and pangenome size metrics.
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    Chapter 14 Robust Identification of Orthologues and Paralogues for Microbial Pan-Genomics Using GET_HOMOLOGUES: A Case Study of pIncA/C Plasmids.
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    Chapter 15 Genome-scale metabolic network reconstruction.
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    Chapter 16 From pangenome to panphenome and back.
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    Chapter 17 Genome-Wide Detection of Selection and Other Evolutionary Forces
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    Chapter 18 The integrated microbial genome resource of analysis.
  20. Altmetric Badge
    Chapter 19 Erratum to: Genome-Wide Detection of Selection and Other Evolutionary Forces
Attention for Chapter 5: Bacterial Metabarcoding by 16S rRNA Gene Ion Torrent Amplicon Sequencing.
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  • High Attention Score compared to outputs of the same age and source (89th percentile)

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Chapter title
Bacterial Metabarcoding by 16S rRNA Gene Ion Torrent Amplicon Sequencing.
Chapter number 5
Book title
Bacterial Pangenomics
Published in
Methods in molecular biology, October 2014
DOI 10.1007/978-1-4939-1720-4_5
Pubmed ID
Book ISBNs
978-1-4939-1719-8, 978-1-4939-1720-4
Authors

Fantini E, Gianese G, Giuliano G, Fiore A, Elio Fantini, Giulio Gianese, Giovanni Giuliano, Alessia Fiore, Fantini, Elio, Gianese, Giulio, Giuliano, Giovanni, Fiore, Alessia

Abstract

Ion Torrent is a next generation sequencing technology based on the detection of hydrogen ions produced during DNA chain elongation; this technology allows analyzing and characterizing genomes, genes, and species. Here, we describe an Ion Torrent procedure applied to the metagenomic analysis of 16S rRNA gene amplicons to study the bacterial diversity in food and environmental samples.

X Demographics

X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 48 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Belgium 1 2%
Canada 1 2%
South Africa 1 2%
Unknown 45 94%

Demographic breakdown

Readers by professional status Count As %
Researcher 17 35%
Student > Master 6 13%
Student > Bachelor 5 10%
Student > Ph. D. Student 5 10%
Student > Postgraduate 5 10%
Other 6 13%
Unknown 4 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 26 54%
Biochemistry, Genetics and Molecular Biology 8 17%
Immunology and Microbiology 2 4%
Medicine and Dentistry 2 4%
Computer Science 1 2%
Other 2 4%
Unknown 7 15%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 4. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 24 June 2015.
All research outputs
#7,477,223
of 23,498,099 outputs
Outputs from Methods in molecular biology
#2,294
of 13,368 outputs
Outputs of similar age
#82,402
of 261,989 outputs
Outputs of similar age from Methods in molecular biology
#13
of 126 outputs
Altmetric has tracked 23,498,099 research outputs across all sources so far. This one has received more attention than most of these and is in the 67th percentile.
So far Altmetric has tracked 13,368 research outputs from this source. They receive a mean Attention Score of 3.4. This one has done well, scoring higher than 82% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 261,989 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 67% of its contemporaries.
We're also able to compare this research output to 126 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 89% of its contemporaries.