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Chemical Biology

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Cover of 'Chemical Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Identification of therapeutic small-molecule leads in cultured cells using multiplexed pathway reporter readouts.
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    Chapter 2 Applying the logic of genetic interaction to discover small molecules that functionally interact with human disease alleles.
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    Chapter 3 Construction and application of a photo-cross-linked chemical array.
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    Chapter 4 High Content Screening for Modulators of Cardiac Differentiation in Human Pluripotent Stem Cells.
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    Chapter 5 Small-Molecule High-Throughput Screening Utilizing Xenopus Egg Extract.
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    Chapter 6 Fission Yeast-Based High-Throughput Screens for PKA Pathway Inhibitors and Activators.
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    Chapter 7 A Method for High-Throughput Analysis of Chronological Aging in Schizosaccharomyces pombe.
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    Chapter 8 Protocols for the Routine Screening of Drug Sensitivity in the Human Parasite Trichomonas vaginalis
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    Chapter 9 Chemical Genetic Screens Using Arabidopsis thaliana Seedlings Grown on Solid Medium
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    Chapter 10 Small-Molecule Screening Using Drosophila Models of Human Neurological Disorders.
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    Chapter 11 High-Throughput Small-Molecule Screening in Caenorhabditis elegans.
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    Chapter 12 Whole-Organism Screening for Modulators of Fasting Metabolism Using Transgenic Zebrafish
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    Chapter 13 High Content Screening for Modulators of Cardiovascular or Global Developmental Pathways in Zebrafish
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    Chapter 14 Extraction Methods of Natural Products from Traditional Chinese Medicines
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    Chapter 15 Bioassay-Guided Identification of Bioactive Molecules from Traditional Chinese Medicines
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    Chapter 16 NMR screening in fragment-based drug design: a practical guide.
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    Chapter 17 Practical Strategies for Small-Molecule Probe Development in Chemical Biology
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    Chapter 18 Principal component analysis as a tool for library design: a case study investigating natural products, brand-name drugs, natural product-like libraries, and drug-like libraries.
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    Chapter 19 Small-Molecule Library Screening by Docking with PyRx.
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    Chapter 20 Fluorous Photoaffinity Labeling to Probe Protein-Small Molecule Interactions
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    Chapter 21 Identification of the Targets of Biologically Active Small Molecules Using Quantitative Proteomics.
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    Chapter 22 Drug Affinity Responsive Target Stability (DARTS) for Small-Molecule Target Identification.
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    Chapter 23 Chemical Genomic Profiling via Barcode Sequencing to Predict Compound Mode of Action.
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    Chapter 24 Image-Based Prediction of Drug Target in Yeast.
Attention for Chapter 21: Identification of the Targets of Biologically Active Small Molecules Using Quantitative Proteomics.
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Chapter title
Identification of the Targets of Biologically Active Small Molecules Using Quantitative Proteomics.
Chapter number 21
Book title
Chemical Biology
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2269-7_21
Pubmed ID
Book ISBNs
978-1-4939-2268-0, 978-1-4939-2269-7
Authors

Glòria Vendrell-Navarro, Andreas Brockmeyer, Herbert Waldmann, Petra Janning, Slava Ziegler, Vendrell-Navarro, Glòria, Brockmeyer, Andreas, Waldmann, Herbert, Janning, Petra, Ziegler, Slava

Abstract

Currently, cell-based screenings yield a multitude of small molecule modulators of diverse biological processes. The most demanding step in the course of elucidation of the mode of action of biologically active compounds is the identification of the target proteins. Although there is no generic approach available, affinity-based chemical proteomics is the most widely applied methodology. Particularly, quantitative chemical proteomics has proven very powerful in the identification of the putative targets of small molecules. Here we describe the procedure for identification of target proteins for small molecules employing affinity chromatography and the stable isotope labeling in cell culture (SILAC) for quantitative proteomics.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 13 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 13 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 4 31%
Student > Ph. D. Student 2 15%
Student > Doctoral Student 1 8%
Professor 1 8%
Student > Master 1 8%
Other 1 8%
Unknown 3 23%
Readers by discipline Count As %
Chemistry 4 31%
Agricultural and Biological Sciences 2 15%
Biochemistry, Genetics and Molecular Biology 2 15%
Unknown 5 38%