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Epigenome Editing

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Cover of 'Epigenome Editing'

Table of Contents

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    Book Overview
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    Chapter 1 Editing the Epigenome: Overview, Open Questions, and Directions of Future Development
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    Chapter 2 Zinc Fingers, TALEs, and CRISPR Systems: A Comparison of Tools for Epigenome Editing
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    Chapter 3 Designing Epigenome Editors: Considerations of Biochemical and Locus Specificities
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    Chapter 4 Generation of TALE-Based Designer Epigenome Modifiers
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    Chapter 5 Neuroepigenetic Editing
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    Chapter 6 Allele-Specific Epigenome Editing
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    Chapter 7 Key to Delivery: The (Epi-)genome Editing Vector Toolbox
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    Chapter 8 CRISPR/dCas9 Switch Systems for Temporal Transcriptional Control
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    Chapter 9 Delivery of Designer Epigenome Modifiers into Primary Human T Cells
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    Chapter 10 Viral Expression of Epigenome Editing Tools in Rodent Brain Using Stereotaxic Surgery Techniques
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    Chapter 11 Stable Expression of Epigenome Editors via Viral Delivery and Genomic Integration
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    Chapter 12 Purified Protein Delivery to Activate an Epigenetically Silenced Allele in Mouse Brain
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    Chapter 13 Non-viral Methodology for Efficient Co-transfection
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    Chapter 14 Chromatin Immunoprecipitation in Human and Yeast Cells
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    Chapter 15 Chromatin Immunoprecipitation and High-Throughput Sequencing (ChIP-Seq): Tips and Tricks Regarding the Laboratory Protocol and Initial Downstream Data Analysis
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    Chapter 16 Generation of Whole Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis
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    Chapter 17 Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data
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    Chapter 18 Whole-Genome Bisulfite Sequencing for the Analysis of Genome-Wide DNA Methylation and Hydroxymethylation Patterns at Single-Nucleotide Resolution
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    Chapter 19 Locus-Specific DNA Methylation Analysis by Targeted Deep Bisulfite Sequencing
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    Chapter 20 DNA Methylation Analysis by Bisulfite Conversion Coupled to Double Multiplexed Amplicon-Based Next-Generation Sequencing (NGS)
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    Chapter 21 Cell-to-Cell Transcription Variability as Measured by Single-Molecule RNA FISH to Detect Epigenetic State Switching
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    Chapter 22 Establishment of Cell Lines Stably Expressing dCas9-Fusions to Address Kinetics of Epigenetic Editing
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    Chapter 23 Editing of DNA Methylation Using dCas9-Peptide Repeat and scFv-TET1 Catalytic Domain Fusions
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    Chapter 24 Chemical Inducible dCas9-Guided Editing of H3K27 Acetylation in Mammalian Cells
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    Chapter 25 Screening Regulatory Element Function with CRISPR/Cas9-based Epigenome Editing
Attention for Chapter 7: Key to Delivery: The (Epi-)genome Editing Vector Toolbox
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Chapter title
Key to Delivery: The (Epi-)genome Editing Vector Toolbox
Chapter number 7
Book title
Epigenome Editing
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7774-1_7
Pubmed ID
Book ISBNs
978-1-4939-7773-4, 978-1-4939-7774-1
Authors

Sabrina Just, Hildegard Büning

Abstract

Curing a genetic disease by repairing the underlying genetic defect is a fascinating concept that has been addressed so far by gene compensation therapy. For this, a functional copy of the gene in question together with elements controlling its expression is produced as a vector and introduced ex vivo into the patient's own cells that subsequently are reinfused. Alternatively, vectors are administered directly in vivo. Although this strategy resulted in impressive therapeutic benefits for patients, the ultimate goal of gene therapy, i.e., a cure by repairing the actual genetic or epigenetic defect, remained an unresolved task. With the advent of designer DNA-binding domains, this goal is coming into reach. These domains are either combined with nucleases and used as molecular precision scissors for introducing DNA breaks at defined sites in the cell's genome preparing for position-selective DNA repair, or they are used as programmable DNA-binding units for positioning epigenome-modifying domains to predefined target sequences. However, for reaching its full potential, these components need to be delivered into cells in an efficient and safe manner. Here, we summarize current viral and non-viral delivery approaches applicable for genome and epigenome editing and discuss their respective advantages and limitations.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 15 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 15 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 4 27%
Lecturer > Senior Lecturer 1 7%
Other 1 7%
Student > Bachelor 1 7%
Researcher 1 7%
Other 2 13%
Unknown 5 33%
Readers by discipline Count As %
Agricultural and Biological Sciences 3 20%
Biochemistry, Genetics and Molecular Biology 2 13%
Chemical Engineering 1 7%
Linguistics 1 7%
Neuroscience 1 7%
Other 0 0%
Unknown 7 47%