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Brachypodium Genomics

Overview of attention for book
Cover of 'Brachypodium Genomics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Methods for Cytogenetic Chromosome Barcoding and Chromosome Painting in Brachypodium distachyon and Its Relative Species
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    Chapter 2 Transcriptional and Posttranscriptional Regulation of Drought Stress Treatments in Brachypodium Leaves
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    Chapter 3 Brachypodium distachyon Long Noncoding RNAs: Genome-Wide Identification and Expression Analysis
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    Chapter 4 A Highly Efficient and Reproducible Fusarium spp. Inoculation Method for Brachypodium distachyon
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    Chapter 5 Tissue Culture (Somatic Embryogenesis)-Induced Tnt1 Retrotransposon-Based Mutagenesis in Brachypodium distachyon
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    Chapter 6 Methods for Xyloglucan Structure Analysis in Brachypodium distachyon
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    Chapter 7 Genomic Approaches to Analyze Alternative Splicing, A Key Regulator of Transcriptome and Proteome Diversity in Brachypodium distachyon
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    Chapter 8 Information Resources for Functional Genomics Studies in Brachypodium distachyon
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    Chapter 9 Methods for Functional Transgenics: Development of Highly Efficient Transformation Protocol in Brachypodium and Its Suitability for Advancing Brachypodium Transgenics
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    Chapter 10 Molecular Markers in Whole Genome Evolution of Brachypodium
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    Chapter 11 Estimate Codon Usage Bias Using Codon Usage Analyzer (CUA)
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    Chapter 12 Identification of Pseudogenes in Brachypodium distachyon Chromosomes
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    Chapter 13 TILLING in Brachypodium distachyon
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    Chapter 14 Method for the Large-Scale Identification of phasiRNAs in Brachypodium distachyon
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    Chapter 15 Evaluation of Genome-Wide Markers and Orthologous Markers in Brachypodium distachyon
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    Chapter 16 Protocol for Coexpression Network Construction and Stress-Responsive Expression Analysis in Brachypodium
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    Chapter 17 Whole Genome DNA Methylation Analysis Using Next-Generation Sequencing (BS-seq)
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    Chapter 18 Application of Tissue Culture and Transformation Techniques in Model Species Brachypodium distachyon
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    Chapter 19 Erratum to: Whole Genome DNA Methylation Analysis of Brachypodium distachyon Using Next-Generation Sequencing (BS-seq)
Attention for Chapter 8: Information Resources for Functional Genomics Studies in Brachypodium distachyon
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Chapter title
Information Resources for Functional Genomics Studies in Brachypodium distachyon
Chapter number 8
Book title
Brachypodium Genomics
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7278-4_8
Pubmed ID
29039006
Book ISBNs
978-1-4939-7276-0, 978-1-4939-7278-4
Authors

Keiichi Mochida, Kazuo Shinozaki, Mochida, Keiichi, Shinozaki, Kazuo

Abstract

Online tools and databases play an essential role in the promotion of functional genomics studies. Several resources for information regarding Brachypodium distachyon (Brachypodium) are available on the Web. In this chapter, we focus on recently published resources for Brachypodium research. The Brachypodium.org website ( http://www.brachypodium.org /) is an information portal that provides links to various genomic resources regarding Brachypodium, including genome annotation and re-sequencing datasets of accessions. RIKEN Full-length cDNA Database (RBFLDB, http://brachy.bmep.riken.jp/ver.1/index.pl ) is a web-accessible database that provides information of Brachypodium full-length cDNAs (FLcDNAs) collected in RIKEN and updated gene structures of Brachypodium based on the FLcDNA sequences as well as results of comparative analyses with available sequence resources for Triticeae crops, wheat, and barley. We introduce the functionalities and availability of these important information resources. Furthermore, we also present brief descriptions of useful online tools that facilitate Brachypodium functional genomics studies.

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X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
 Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 5 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 1 20%
Student > Bachelor 1 20%
Researcher 1 20%
Unknown 2 40%
Readers by discipline Count As %
Agricultural and Biological Sciences 2 40%
Computer Science 1 20%
Unknown 2 40%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 05 June 2018.
All research outputs
#18,574,814
of 23,006,268 outputs
Outputs from Methods in molecular biology
#7,961
of 13,160 outputs
Outputs of similar age
#330,447
of 442,254 outputs
Outputs of similar age from Methods in molecular biology
#950
of 1,498 outputs
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