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Brachypodium Genomics

Overview of attention for book
Cover of 'Brachypodium Genomics'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Methods for Cytogenetic Chromosome Barcoding and Chromosome Painting in Brachypodium distachyon and Its Relative Species
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    Chapter 2 Transcriptional and Posttranscriptional Regulation of Drought Stress Treatments in Brachypodium Leaves
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    Chapter 3 Brachypodium distachyon Long Noncoding RNAs: Genome-Wide Identification and Expression Analysis
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    Chapter 4 A Highly Efficient and Reproducible Fusarium spp. Inoculation Method for Brachypodium distachyon
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    Chapter 5 Tissue Culture (Somatic Embryogenesis)-Induced Tnt1 Retrotransposon-Based Mutagenesis in Brachypodium distachyon
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    Chapter 6 Methods for Xyloglucan Structure Analysis in Brachypodium distachyon
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    Chapter 7 Genomic Approaches to Analyze Alternative Splicing, A Key Regulator of Transcriptome and Proteome Diversity in Brachypodium distachyon
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    Chapter 8 Information Resources for Functional Genomics Studies in Brachypodium distachyon
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    Chapter 9 Methods for Functional Transgenics: Development of Highly Efficient Transformation Protocol in Brachypodium and Its Suitability for Advancing Brachypodium Transgenics
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    Chapter 10 Molecular Markers in Whole Genome Evolution of Brachypodium
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    Chapter 11 Estimate Codon Usage Bias Using Codon Usage Analyzer (CUA)
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    Chapter 12 Identification of Pseudogenes in Brachypodium distachyon Chromosomes
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    Chapter 13 TILLING in Brachypodium distachyon
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    Chapter 14 Method for the Large-Scale Identification of phasiRNAs in Brachypodium distachyon
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    Chapter 15 Evaluation of Genome-Wide Markers and Orthologous Markers in Brachypodium distachyon
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    Chapter 16 Protocol for Coexpression Network Construction and Stress-Responsive Expression Analysis in Brachypodium
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    Chapter 17 Whole Genome DNA Methylation Analysis Using Next-Generation Sequencing (BS-seq)
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    Chapter 18 Application of Tissue Culture and Transformation Techniques in Model Species Brachypodium distachyon
  20. Altmetric Badge
    Chapter 19 Erratum to: Whole Genome DNA Methylation Analysis of Brachypodium distachyon Using Next-Generation Sequencing (BS-seq)
Attention for Chapter 5: Tissue Culture (Somatic Embryogenesis)-Induced Tnt1 Retrotransposon-Based Mutagenesis in Brachypodium distachyon
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Chapter title
Tissue Culture (Somatic Embryogenesis)-Induced Tnt1 Retrotransposon-Based Mutagenesis in Brachypodium distachyon
Chapter number 5
Book title
Brachypodium Genomics
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7278-4_5
Pubmed ID
Book ISBNs
978-1-4939-7276-0, 978-1-4939-7278-4
Authors

Upinder S. Gill, Juan C. Serrani-Yarce, Hee-Kyung Lee, Kirankumar S. Mysore

Abstract

Brachypodium distachyon is a model grass species for economically important cereal crops. Efforts are in progress to develop useful functional genomic resources in Brachypodium. A tobacco retrotransposon, Tnt1, has been used successfully in recent past to generate insertional mutagenesis in several dicot plant species. Tnt1 retrotransposon replicates, transposes, and inserts at multiple random genomic locations in the plant genome. Transposition occurs only during somatic embryogenesis but not during seed transmission. We developed Brachypodium transgenic plants that can express the Tnt1 element. Here, we describe an efficient tissue culture-based approach to generate Tnt1 insertional mutant population using transgenic Brachypodium line expressing the Tnt1 retrotransposon.

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X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 7 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 7 100%

Demographic breakdown

Readers by professional status Count As %
Unspecified 1 14%
Student > Ph. D. Student 1 14%
Researcher 1 14%
Lecturer 1 14%
Student > Master 1 14%
Other 0 0%
Unknown 2 29%
Readers by discipline Count As %
Agricultural and Biological Sciences 2 29%
Unspecified 1 14%
Computer Science 1 14%
Business, Management and Accounting 1 14%
Unknown 2 29%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 19 January 2018.
All research outputs
#14,673,970
of 24,608,500 outputs
Outputs from Methods in molecular biology
#3,948
of 13,844 outputs
Outputs of similar age
#231,080
of 452,582 outputs
Outputs of similar age from Methods in molecular biology
#364
of 1,485 outputs
Altmetric has tracked 24,608,500 research outputs across all sources so far. This one is in the 39th percentile – i.e., 39% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,844 research outputs from this source. They receive a mean Attention Score of 3.5. This one has gotten more attention than average, scoring higher than 69% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 452,582 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 47th percentile – i.e., 47% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,485 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 73% of its contemporaries.