| Chapter title |
PlaNet: Comparative Co-Expression Network Analyses for Plants.
|
|---|---|
| Chapter number | 12 |
| Book title |
Plant Genomics Databases
|
| Published in |
Methods in molecular biology, January 2017
|
| DOI | 10.1007/978-1-4939-6658-5_12 |
| Pubmed ID | |
| Book ISBNs |
978-1-4939-6656-1, 978-1-4939-6658-5
|
| Authors |
Sebastian Proost, Marek Mutwil |
| Editors |
Aalt D.J van Dijk |
| Abstract |
Functional relations between genes can be represented as networks. These networks have been successfully used to infer gene function and to mediate transfer of functional knowledge between species. Transcriptionally coordinated or co-expressed genes tend to be functionally related, which combined with availability of transcriptomic data for multiple plant species make the co-expression networks a useful resource for the plant community. In this chapter, we describe PlaNet ( www.gene2function.de ), a database that includes comparative analyses for co-expression networks of 11 plant species. We exemplify how the tools included in PlaNet can be used to predict gene function, transfer knowledge, and discover conserved and multiplied gene modules. |
Mendeley readers
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 19 | 100% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Student > Ph. D. Student | 5 | 26% |
| Student > Master | 4 | 21% |
| Student > Postgraduate | 3 | 16% |
| Student > Bachelor | 1 | 5% |
| Lecturer > Senior Lecturer | 1 | 5% |
| Other | 2 | 11% |
| Unknown | 3 | 16% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 11 | 58% |
| Biochemistry, Genetics and Molecular Biology | 4 | 21% |
| Nursing and Health Professions | 1 | 5% |
| Unknown | 3 | 16% |