| Chapter title |
PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data.
|
|---|---|
| Chapter number | 2 |
| Book title |
Plant Genomics Databases
|
| Published in |
Methods in molecular biology, January 2017
|
| DOI | 10.1007/978-1-4939-6658-5_2 |
| Pubmed ID | |
| Book ISBNs |
978-1-4939-6656-1, 978-1-4939-6658-5
|
| Authors |
Manuel Spannagl, Thomas Nussbaumer, Kai Bader, Heidrun Gundlach, Klaus F. X. Mayer, Spannagl, Manuel, Nussbaumer, Thomas, Bader, Kai, Gundlach, Heidrun, Mayer, Klaus F. X. |
| Editors |
Aalt D.J van Dijk |
| Abstract |
Plant Genome and Systems Biology (PGSB), formerly Munich Institute for Protein Sequences (MIPS) PlantsDB, is a database framework for the integration and analysis of plant genome data, developed and maintained for more than a decade now. Major components of that framework are genome databases and analysis resources focusing on individual (reference) genomes providing flexible and intuitive access to data. Another main focus is the integration of genomes from both model and crop plants to form a scaffold for comparative genomics, assisted by specialized tools such as the CrowsNest viewer to explore conserved gene order (synteny). Data exchange and integrated search functionality with/over many plant genome databases is provided within the transPLANT project. |
Mendeley readers
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| Unknown | 14 | 100% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Researcher | 3 | 21% |
| Student > Master | 2 | 14% |
| Student > Ph. D. Student | 2 | 14% |
| Student > Doctoral Student | 1 | 7% |
| Student > Bachelor | 1 | 7% |
| Other | 3 | 21% |
| Unknown | 2 | 14% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 7 | 50% |
| Biochemistry, Genetics and Molecular Biology | 1 | 7% |
| Chemical Engineering | 1 | 7% |
| Unknown | 5 | 36% |