Chapter title |
Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza Sativa and Other Plant Species.
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Chapter number | 13 |
Book title |
Plant Genomics Databases
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Published in |
Methods in molecular biology, January 2017
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DOI | 10.1007/978-1-4939-6658-5_13 |
Pubmed ID | |
Book ISBNs |
978-1-4939-6656-1, 978-1-4939-6658-5
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Authors |
Kudo, Toru, Terashima, Shin, Takaki, Yuno, Nakamura, Yukino, Kobayashi, Masaaki, Yano, Kentaro, Toru Kudo, Shin Terashima, Yuno Takaki, Yukino Nakamura, Masaaki Kobayashi, Kentaro Yano |
Editors |
Aalt D.J van Dijk |
Abstract |
Analysis of a gene expression network (GEN), which is constructed based on similarity of gene expression profiles, is a widely used approach to gain clues for new biological insights. The recent abundant availability of transcriptome data in public databases is enabling GEN analysis under various experimental conditions, and even comparative GEN analysis across species. To provide a platform to gain biological insights from public transcriptome data, valuable databases have been created and maintained. This chapter introduces the web database OryzaExpress, providing omics information on Oryza sativa (rice). The integrated database Plant Omics Data Center, supporting a wide variety of plant species, is also described to compare omics information among multiple plant species. |
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Unknown | 5 | 100% |
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Student > Ph. D. Student | 1 | 20% |
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Biochemistry, Genetics and Molecular Biology | 2 | 40% |
Agricultural and Biological Sciences | 2 | 40% |
Computer Science | 1 | 20% |