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Computational Science – ICCS 2006

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Table of Contents

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    Book Overview
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    Chapter 1 Numerical Modeling of Plasma – Flow Interaction
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    Chapter 2 Numerical Methods for Reacting Gas Flow Simulations
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    Chapter 3 Reduced Flame Kinetics Via Rate-Controlled Constrained Equilibrium
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    Chapter 4 Flow Patterns in the Vicinity of Triple Line Dynamics Arising from a Local Surface Tension Model
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    Chapter 5 A Multilevel-Multigrid Approach to Multiscale Electromagnetic Simulation
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    Chapter 6 Scalable Simulation of Electromagnetic Hybrid Codes
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    Chapter 7 Numerical Modelling of Poroviscoelastic Grounds in the Time Domain Using a Parallel Approach
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    Chapter 8 Numerical Modeling of Tidal Effects and Hydrodymanics in the Po River Estuary
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    Chapter 9 Adaptive Mesh Refinement and Domain Decomposition: A Framework to Study Multi-physical and Multi-scale Phenomena. First Application to Reacting Gas Flows
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    Chapter 10 Time Splitting and Grid Refinement Methods in the Lattice Boltzmann Framework for Solving a Reaction-Diffusion Process
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    Chapter 11 Mesoscopic Simulations of Unsteady Shear-Thinning Flows
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    Chapter 12 A Multiphysics Model of Capillary Growth and Remodeling
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    Chapter 13 Liquid Computations and Large Simulations of the Mammalian Visual Cortex
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    Chapter 14 Which Meshes Are Better Conditioned: Adaptive, Uniform, Locally Refined or Locally Adjusted?
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    Chapter 15 Parallel Simulation of Three–Dimensional Bursting with MPI and OpenMP
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    Chapter 16 Numerical Simulation of Phase Transformations in Shape Memory Alloy Thin Films
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    Chapter 17 A Virtual Test Facility for Simulating Detonation-Induced Fracture of Thin Flexible Shells
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    Chapter 18 Data-Driven Inverse Modelling of Ionic Polymer Conductive Composite Plates
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    Chapter 19 Exploiting Real-Time 3d Visualisation to Enthuse Students: A Case Study of Using Visual Python in Engineering
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    Chapter 20 Involving Undergraduates in Computational Science and Engineering Research: Successes and Challenges
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    Chapter 21 A Project Based Approach to Teaching Parallel Systems
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    Chapter 22 Learning by Doing: Software Projects in CSE Education
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    Chapter 23 Computational Math, Science, and Technology (CMST): A Strategy to Improve STEM Workforce and Pedagogy to Improve Math and Science Education
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    Chapter 24 The School of Computational Science at Florida State University
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    Chapter 25 Teaching the Foundations of Computational Science on the Undergraduate Level
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    Chapter 26 Computational Science: An Intermingling of Science, Mathematics, and Computer Science
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    Chapter 27 A Framework for Conceptually Modelling the Domain Knowledge of an Instructional System
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    Chapter 28 Platyhelminthes Are [Re]constructed Recursively
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    Chapter 29 Extensions for 3D Graphics Rendering Engine Used for Direct Tessellation of Spline Surfaces
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    Chapter 30 An Evolution Computation Based Approach to Synthesize Video Texture
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    Chapter 31 Deformation of Dynamic Surfaces
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    Chapter 32 A New Smoothing Algorithm for Quadrilateral and Hexahedral Meshes
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    Chapter 33 The Calculation of Parametric NURBS Surface Interval Values Using Neural Networks
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    Chapter 34 Characterizing and Covering Some Subclasses of Orthogonal Polygons
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    Chapter 35 Techniques for Computing Viewpoint Entropy of a 3D Scene
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    Chapter 36 3D Object Repair Using 2D Algorithms
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    Chapter 37 Extraction of Ridges-Valleys for Feature-Preserving Simplification of Polygonal Models
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    Chapter 38 Multiresolution 3D Rendering on Mobile Devices
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    Chapter 39 Multiresolution Remeshing Using Weighted Centroidal Voronoi Diagram
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    Chapter 40 Metric 3D Surface Mesh Generation Using Delaunay Criteria
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    Chapter 41 A Multiresolution Model for Non-photorealistic Rendering of Trees
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    Chapter 42 Model Creation by Velocity Controlled Surface Deformation
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    Chapter 43 Rendering of Unorganized Points with Octagonal Splats
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    Chapter 44 Statistical Based Vectorization for Standard Vector Graphics
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    Chapter 45 Robustly Computing Intersection Curves of Two Canal Surfaces with Quadric Decomposition
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    Chapter 46 Triangle Strip Multiresolution Modelling Using Sorted Edges
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    Chapter 47 Improvement Construction for Planar G2 Transition Curve Between Two Separated Circles
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    Chapter 48 B-Spline Curve Fitting Using Dominant Points
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    Chapter 49 Quality and Performance Evaluation of Ray-Space Interpolation for Free Viewpoint Video Systems
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    Chapter 50 Framework for Adaptive Sampling of Point-Based Surfaces Using Geometry and Color Attributes
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    Chapter 51 Normalizing Relational Database Schemas Using Mathematica
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    Chapter 52 Extending Maple Capabilities for Solving and Displaying Inequalities
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    Chapter 53 Phase Response Curves, Delays and Synchronization in Matlab
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    Chapter 54 A Hybrid Approach for Normal Factorization of Polynomials
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    Chapter 55 Computer Algebra for the Formation of Structural Matrices of Piezoceramic Finite Elements
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    Chapter 56 Symbolic Analysis of Economical Models with Mathematica
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    Chapter 57 Polarizable Theta-Stable Parabolic Subalgebras and K ℂ -Saturation in the Non-compact Real Forms of G 2 and F 4
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    Chapter 58 Dynamic Load Balancing with MatlabMPI
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    Chapter 59 Maple Implementation of the Chor-Rivest Cryptosystem
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    Chapter 60 Development of TRIP: Fast Sparse Multivariate Polynomial Multiplication Using Burst Tries
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    Chapter 61 A Symbolic Approach to Quantum Computation Simulation
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    Chapter 62 Development of SyNRAC
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    Chapter 63 Automated Discovery in Elementary Extrema Problems
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    Chapter 64 Stabilizing Second-Order Linear Dynamic Systems Via Hybrid Output Feedback Controls
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    Chapter 65 Computation of the Adjoint Matrix
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    Chapter 66 MathBlackBoard as Effective Tool in Classroom
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    Chapter 67 Finding Inefficiencies in OpenMP Applications Automatically with Periscope
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    Chapter 68 Analysis of the Spatial and Temporal Locality in Data Accesses
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    Chapter 69 A Performance Profile and Test Tool for Development of Embedded Software Using Various Report Views
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    Chapter 70 SCE Toolboxes for the Development of High-Level Parallel Applications
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    Chapter 71 Introducing the Open Trace Format (OTF)
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    Chapter 72 Dynamic Instrumentation of Distributed Java Applications Using Bytecode Modifications
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    Chapter 73 Fine-Grained Instrumentation and Monitoring of Legacy Applications in a Service-Oriented Environment
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    Chapter 74 Monitoring of WS-Based Applications
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    Chapter 75 Using Sequential Debugging Techniques with Massively Parallel Programs
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    Chapter 76 Workflow for Integrated Object Detection in Collaborative Video Annotation Environments
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    Chapter 77 RMIX: A Dynamic, Heterogeneous, Reconfigurable Communication Framework
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    Chapter 78 Computational Science – ICCS 2006
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    Chapter 79 An Efficient and Reflective Event Filtering for Context-Awareness in Ubiquitous Computing
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    Chapter 80 Computational Science – ICCS 2006
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    Chapter 81 Using Haptics to Improve Immersion in Virtual Environments
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    Chapter 82 A Novel Navigation Algorithm for Locomotion Interfaces with Programmable Platforms
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    Chapter 83 Efficient and Practical Algorithms for Deducing the History of Recombination in Populations
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    Chapter 84 Chordal Graphs in Computational Biology – New Insights and Applications
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    Chapter 85 Exemplar Longest Common Subsequence
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    Chapter 86 Synonymous Codon Substitution Matrices
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    Chapter 87 SEPA: Approximate Non-subjective Empirical p -Value Estimation for Nucleotide Sequence Alignment
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    Chapter 88 Multiple Sequence Alignment by Ant Colony Optimization and Divide-and-Conquer
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    Chapter 89 COMBAT: Search Rapidly for Highly Similar Protein-Coding Sequences Using Bipartite Graph Matching
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    Chapter 90 Missing Values Estimation in Microarray Data with Partial Least Squares Regression
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    Chapter 91 Boost Feature Subset Selection: A New Gene Selection Algorithm for Microarray Dataset
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    Chapter 92 A Hybrid Feature Selection Approach for Microarray Gene Expression Data
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    Chapter 93 A Self-supervised Learning Framework for Classifying Microarray Gene Expression Data
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    Chapter 94 Pooling Evidence to Identify Cell Cycle–Regulated Genes
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    Chapter 95 Discovering Sequence-Structure Patterns in Proteins with Variable Secondary Structure
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    Chapter 96 Clustering Support Vector Machines and Its Application to Local Protein Tertiary Structure Prediction
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    Chapter 97 Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model
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    Chapter 98 A Multilevel Approach to Identify Functional Modules in a Yeast Protein-Protein Interaction Network
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    Chapter 99 Towards Detecting Protein Complexes from Protein Interaction Data
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    Chapter 100 High-Throughput SNP Genotyping by SBE/SBH
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    Chapter 101 Tag SNP Selection Based on Multivariate Linear Regression
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    Chapter 102 Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping
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    Chapter 103 Phasing of 2-SNP Genotypes Based on Non-random Mating Model
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    Chapter 104 Event Models for Tumor Classification with SAGE Gene Expression Data
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    Chapter 105 Genomes Containing Duplicates Are Hard to Compare
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    Chapter 106 Rearrangement of Noisy Genomes
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    Chapter 107 Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees
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    Chapter 108 Reconstructing Ancestor-Descendant Lineages from Serially-Sampled Data: A Comparison Study
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    Chapter 109 Robustness of Greedy Type Minimum Evolution Algorithms
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    Chapter 110 Space and Time Efficient Algorithms for Planted Motif Search
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    Chapter 111 Predictability of Rules in HIV-1 Protease Cleavage Site Analysis
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    Chapter 112 Statistical Feature Selection from Chaos Game Representation for Promoter Recognition
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    Chapter 113 Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L
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    Chapter 114 DigitalTree: A Tool for Displaying Biological Data in Tree Structure
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    Chapter 115 HiSP: A Probabilistic Data Mining Technique for Protein Classification
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    Chapter 116 Cross-Ontological Analytics: Combining Associative and Hierarchical Relations in the Gene Ontologies to Assess Gene Product Similarity
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    Chapter 117 A GO-Based Method for Assessing the Biological Plausibility of Regulatory Hypotheses
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    Chapter 118 Delays in Biological Regulatory Networks (BRN)
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    Chapter 119 Phase Transitions in Gene Knockdown Networks of Transitive RNAi
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    Chapter 120 Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors
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    Chapter 121 Using SBASCO to Solve Reaction-Diffusion Equations in Two-Dimensional Irregular Domains
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    Chapter 122 Higher Order Flattening
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    Chapter 123 Combining Measurement and Stochastic Modelling to Enhance Scheduling Decisions for a Parallel Mean Value Analysis Algorithm
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    Chapter 124 Joint Structured/Unstructured Parallelism Exploitation in muskel
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    Chapter 125 Co-Array Collectives: Refined Semantics for Co-Array Fortran
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    Chapter 126 An Approach to Buffer Management in Java HPC Messaging
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    Chapter 127 A Low Complexity and Robust Frequency Offset Estimation Algorithm for OFDM-Based WLAN Systems
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    Chapter 128 Simplified Signal Detection for BLAST Architecture with ML and DFE Detectors
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    Chapter 129 Scenario Decomposition Based Analysis of Next Generation Mobile Services
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    Chapter 130 A Power Saving Scheme for Integrated WLAN and Cellular Networks
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    Chapter 131 The Optimal Subchannel and Bit Allocation Problem for OFDM
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    Chapter 132 Bluetooth Broadcasting Performance: Reliability and Throughput
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    Chapter 133 An Optimized Two Factor Authenticated Key Exchange Protocol in PWLANs
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    Chapter 134 Adaptive Clustering with Virtual Subnets Support in Ad Hoc Networks
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    Chapter 135 A Service Management Architecture for NEMO in IPv4 and IPv6 Networks
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    Chapter 136 Overlapped Detection Via Approximate Entropy Estimation Against Flooding Attack in Mobile Sensor Networks
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    Chapter 137 Implementation of Next Generation Mobile Service: The Context-Aware Follow-Me Service
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    Chapter 138 Multi-piconet Formation to Increase Channel Utilization in IEEE 802.15.3 High-Rate WPAN
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    Chapter 139 Unencapsulated Mobile Multicast Routing for Next Generation Video Networks
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    Chapter 140 Channel Estimation of High Rate WPAN System with Diversity Technique
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    Chapter 141 A Timestamp Tree-Based Cache Invalidation Report Scheme in Mobile Computing Environments
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    Chapter 142 Clustering Versus Evenly Distributing Energy Dissipation in Wireless Sensor Routing for Prolonging Network Lifetime
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    Chapter 143 On the Effect of Heterogeneous Traffic Sources on the Network Availability for Wireless Sensor Grids
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    Chapter 144 Selective Handover Technique on Multihomed Mobile Network Environment
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    Chapter 145 Collaborative Trust-Based Shortest Secure Path Discovery in Mobile Ad Hoc Networks
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    Chapter 146 An Efficient Neighbor Knowledge Based Broadcasting for Mobile Ad Hoc Networks
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    Chapter 147 Maximum Lifetime Paths for the High Packet Delivery Ratio Using Fast Recovery in a Mobile Ad Hoc Network
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    Chapter 148 Synonymous Codon Substitution Matrices
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    Chapter 149 Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors
Attention for Chapter 104: Event Models for Tumor Classification with SAGE Gene Expression Data
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Chapter title
Event Models for Tumor Classification with SAGE Gene Expression Data
Chapter number 104
Book title
Computational Science – ICCS 2006
Published by
Springer, Berlin, Heidelberg, May 2006
DOI 10.1007/11758525_104
Book ISBNs
978-3-54-034381-3, 978-3-54-034382-0
Authors

Xin Jin, Anbang Xu, Guoxing Zhao, Jixin Ma, Rongfang Bie

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