Chapter title |
Molecular Epidemiology Database for Sequence Management and Data Mining
|
---|---|
Chapter number | 2 |
Book title |
Human T-Lymphotropic Viruses
|
Published in |
Methods in molecular biology, March 2017
|
DOI | 10.1007/978-1-4939-6872-5_2 |
Pubmed ID | |
Book ISBNs |
978-1-4939-6870-1, 978-1-4939-6872-5
|
Authors |
Araújo, Thessika Hialla Almeida, de Almeida Rego, Filipe Ferreira, Alcantara, Luiz Carlos Junior, Thessika Hialla Almeida Araújo, Filipe Ferreira de Almeida Rego, Luiz Carlos Junior Alcantara, Almeida Rego, Filipe Ferreira, Almeida Rego, Filipe Ferreira de |
Abstract |
A central database to aggregate sequence information from a range of epidemiological aspects including HTLV-1 pathogenesis, origin, and evolutionary dynamic would be useful to scientists and physicians worldwide. This Chapter describes two online tools for studies related to HTLV-1, the HTLV-1 Molecular Epidemiology Database and the HTLV-1 Subtyping Tool. The HTLV-1 Molecular Epidemiology Database is a tool for sequence management and data mining which allows researchers to download sequences with clinical and demographic information. The HTLV-1 Subtyping Tool is an online software used for HTLV-1 genotyping, the algorithm consists in the alignment of a query sequence with a carefully selected set of predefined reference strains, followed by phylogenetic analysis. |
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