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Pseudogenes

Overview of attention for book
Cover of 'Pseudogenes'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Pseudogene Redux with New Biological Significance
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    Chapter 2 Contribution of Pseudogenes to Sequence Diversity
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    Chapter 3 Computational Methods for Pseudogene Annotation Based on Sequence Homology
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    Chapter 4 Computational Methods of Identification of Pseudogenes Based on Functionality: Entropy and GC Content.
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    Chapter 5 Methods of Identification of Pseudogenes Based on Functionality: Hybridization of 18S rRNA and mRNA During Translation
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    Chapter 6 Whole-Genome Identification of Neutrally Evolving Pseudogenes Using the Evolutionary Measure dN/dS
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    Chapter 7 Methods to study the occurrence and the evolution of pseudogenes through a phylogenetic approach.
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    Chapter 8 Methods for Detecting Transcribed Pseudogenes: PCR on Regions of High Sequence Similarity Followed by Cloning and Sequencing
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    Chapter 9 RNA Amplification for Pseudogene Detection Using RNA-Seq.
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    Chapter 10 GENCODE Pseudogenes
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    Chapter 11 Methods to Detect Transcribed Pseudogenes: RNA-Seq Discovery Allows Learning Through Features
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    Chapter 12 Proteomics techniques for the detection of translated pseudogenes.
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    Chapter 13 Pseudogenes as Competitive Endogenous RNAs: Target Prediction and Validation.
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    Chapter 14 Pseudogenes: A Novel Source of trans-Acting Antisense RNAs
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    Chapter 15 Pseudogene-Derived Endogenous siRNAs and Their Function
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    Chapter 16 Methods to Study Translated Pseudogenes: In Vitro Translation, Fusion with a Tag/Reporter Gene, and Complementation Assay
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    Chapter 17 Targeted and robust amplification of mitochondrial DNA in the presence of nuclear-encoded mitochondrial pseudogenes using φ29 DNA polymerases.
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    Chapter 18 Pseudogenes
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    Chapter 19 Mutational Analysis of CYP21A2 Gene and CYP21A1P Pseudogene: Long-range PCR on Genomic DNA.
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    Chapter 20 PMS2 Gene Mutational Analysis: Direct cDNA Sequencing to Circumvent Pseudogene Interference
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    Chapter 21 Dealing with Pseudogenes in Molecular Diagnostics in the Next-Generation Sequencing Era
Attention for Chapter 9: RNA Amplification for Pseudogene Detection Using RNA-Seq.
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About this Attention Score

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  • High Attention Score compared to outputs of the same age and source (89th percentile)

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Chapter title
RNA Amplification for Pseudogene Detection Using RNA-Seq.
Chapter number 9
Book title
Pseudogenes
Published in
Methods in molecular biology, April 2014
DOI 10.1007/978-1-4939-0835-6_9
Pubmed ID
Book ISBNs
978-1-4939-0834-9, 978-1-4939-0835-6
Authors

Tsoi SC, Dyck MK, Stephen C. M. Tsoi Ph.D., Michael K. Dyck, Stephen C. M. Tsoi, Tsoi, Stephen C. M., Dyck, Michael K.

Editors

Laura Poliseno

Abstract

Transcriptomic research using microarrays and RNA-Sequencing (RNA-seq) is now possible starting from minute biological samples, such as clinical specimens or embryos, due to the development of highly sensitive and reproducible cDNA synthesis methods. Here, we describe a quick method of RNA amplification and double-stranded cDNA synthesis starting with 10 ng of high-quality total RNA extracted from porcine embryos. The final product (double-stranded DNA) is adequate for the detection by RNA-seq of protein-coding transcripts, as well as of all the other classes of noncoding RNAs, including pseudogenes.

X Demographics

X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 5 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 3 60%
Student > Ph. D. Student 1 20%
Unknown 1 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 1 20%
Agricultural and Biological Sciences 1 20%
Medicine and Dentistry 1 20%
Unknown 2 40%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 5. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 22 May 2014.
All research outputs
#6,134,910
of 22,756,196 outputs
Outputs from Methods in molecular biology
#1,817
of 13,089 outputs
Outputs of similar age
#58,344
of 227,088 outputs
Outputs of similar age from Methods in molecular biology
#15
of 145 outputs
Altmetric has tracked 22,756,196 research outputs across all sources so far. This one has received more attention than most of these and is in the 72nd percentile.
So far Altmetric has tracked 13,089 research outputs from this source. They receive a mean Attention Score of 3.3. This one has done well, scoring higher than 85% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 227,088 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 73% of its contemporaries.
We're also able to compare this research output to 145 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 89% of its contemporaries.