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Plant Bioinformatics

Overview of attention for book
Cover of 'Plant Bioinformatics'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Using GenBank.
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    Chapter 2 UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View.
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    Chapter 3 KEGG Bioinformatics Resource for Plant Genomics and Metabolomics.
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    Chapter 4 Plant Bioinformatics
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    Chapter 5 The Plant Ontology: A Tool for Plant Genomics.
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    Chapter 6 Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data.
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    Chapter 7 Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.
  9. Altmetric Badge
    Chapter 8 PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes.
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    Chapter 9 MaizeGDB: The Maize Genetics and Genomics Database.
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    Chapter 10 WheatGenome.info: A Resource for Wheat Genomics Resource.
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    Chapter 11 User Guidelines for the Brassica Database: BRAD.
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    Chapter 12 TAG Sequence Identification of Genomic Regions Using TAGdb.
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    Chapter 13 Short Read Alignment Using SOAP2.
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    Chapter 14 Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings.
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    Chapter 15 Analysis of Genotyping-by-Sequencing (GBS) Data.
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    Chapter 16 Skim-Based Genotyping by Sequencing Using a Double Haploid Population to Call SNPs, Infer Gene Conversions, and Improve Genome Assemblies.
  18. Altmetric Badge
    Chapter 17 Finding and Characterizing Repeats in Plant Genomes.
  19. Altmetric Badge
    Chapter 18 Analysis of RNA-Seq Data Using TopHat and Cufflinks.
Attention for Chapter 4: Plant Bioinformatics
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Chapter title
Plant Bioinformatics
Chapter number 4
Book title
Plant Bioinformatics
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3167-5_4
Pubmed ID
Book ISBNs
978-1-4939-3166-8, 978-1-4939-3167-5
Authors

Jaiswal, Pankaj, Usadel, Björn, Pankaj Jaiswal, Björn Usadel

Editors

David Edwards

Abstract

Pathway databases provide information about the role of chemicals, genes, and gene products in the form of protein or RNA, their interactions leading to the formulation of metabolic, transport, regulatory, and signaling reactions. The reactions can then be tethered by the principle of inputs and outputs of one or more reaction to create pathways. This chapter provides a list of various online databases that carry information about plant pathways and provides a brief overview of how to use the pathway databases such as WikiPathways Plants Portal, MapMan and the cereal crop pathway databases like RiceCyc and MaizeCyc, that were developed using the Pathway Tools software.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 14 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 7%
Unknown 13 93%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 5 36%
Researcher 3 21%
Student > Doctoral Student 2 14%
Professor 1 7%
Student > Master 1 7%
Other 1 7%
Unknown 1 7%
Readers by discipline Count As %
Agricultural and Biological Sciences 7 50%
Biochemistry, Genetics and Molecular Biology 2 14%
Environmental Science 1 7%
Computer Science 1 7%
Chemistry 1 7%
Other 0 0%
Unknown 2 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 25 May 2016.
All research outputs
#18,459,684
of 22,873,031 outputs
Outputs from Methods in molecular biology
#7,922
of 13,130 outputs
Outputs of similar age
#284,542
of 393,689 outputs
Outputs of similar age from Methods in molecular biology
#846
of 1,471 outputs
Altmetric has tracked 22,873,031 research outputs across all sources so far. This one is in the 11th percentile – i.e., 11% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,130 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 24th percentile – i.e., 24% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 393,689 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 15th percentile – i.e., 15% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,471 others from the same source and published within six weeks on either side of this one. This one is in the 28th percentile – i.e., 28% of its contemporaries scored the same or lower than it.