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Plant Bioinformatics

Overview of attention for book
Cover of 'Plant Bioinformatics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Using GenBank.
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    Chapter 2 UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View.
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    Chapter 3 KEGG Bioinformatics Resource for Plant Genomics and Metabolomics.
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    Chapter 4 Plant Bioinformatics
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    Chapter 5 The Plant Ontology: A Tool for Plant Genomics.
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    Chapter 6 Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data.
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    Chapter 7 Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.
  9. Altmetric Badge
    Chapter 8 PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes.
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    Chapter 9 MaizeGDB: The Maize Genetics and Genomics Database.
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    Chapter 10 WheatGenome.info: A Resource for Wheat Genomics Resource.
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    Chapter 11 User Guidelines for the Brassica Database: BRAD.
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    Chapter 12 TAG Sequence Identification of Genomic Regions Using TAGdb.
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    Chapter 13 Short Read Alignment Using SOAP2.
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    Chapter 14 Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings.
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    Chapter 15 Analysis of Genotyping-by-Sequencing (GBS) Data.
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    Chapter 16 Skim-Based Genotyping by Sequencing Using a Double Haploid Population to Call SNPs, Infer Gene Conversions, and Improve Genome Assemblies.
  18. Altmetric Badge
    Chapter 17 Finding and Characterizing Repeats in Plant Genomes.
  19. Altmetric Badge
    Chapter 18 Analysis of RNA-Seq Data Using TopHat and Cufflinks.
Attention for Chapter 10: WheatGenome.info: A Resource for Wheat Genomics Resource.
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Chapter title
WheatGenome.info: A Resource for Wheat Genomics Resource.
Chapter number 10
Book title
Plant Bioinformatics
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3167-5_10
Pubmed ID
Book ISBNs
978-1-4939-3166-8, 978-1-4939-3167-5
Authors

Lai, Kaitao, Kaitao Lai

Editors

David Edwards

Abstract

An integrated database with a variety of Web-based systems named WheatGenome.info hosting wheat genome and genomic data has been developed to support wheat research and crop improvement. The resource includes multiple Web-based applications, which are implemented as a variety of Web-based systems. These include a GBrowse2-based wheat genome viewer with BLAST search portal, TAGdb for searching wheat second generation genome sequence data, wheat autoSNPdb, links to wheat genetic maps using CMap and CMap3D, and a wheat genome Wiki to allow interaction between diverse wheat genome sequencing activities. This portal provides links to a variety of wheat genome resources hosted at other research organizations. This integrated database aims to accelerate wheat genome research and is freely accessible via the web interface at http://www.wheatgenome.info/ .

X Demographics

X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 7 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 7 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 2 29%
Librarian 1 14%
Student > Bachelor 1 14%
Student > Doctoral Student 1 14%
Student > Ph. D. Student 1 14%
Other 1 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 3 43%
Biochemistry, Genetics and Molecular Biology 2 29%
Nursing and Health Professions 1 14%
Medicine and Dentistry 1 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 25 May 2016.
All research outputs
#15,349,419
of 22,831,537 outputs
Outputs from Methods in molecular biology
#5,344
of 13,126 outputs
Outputs of similar age
#230,864
of 393,555 outputs
Outputs of similar age from Methods in molecular biology
#545
of 1,470 outputs
Altmetric has tracked 22,831,537 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,126 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 44th percentile – i.e., 44% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 393,555 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 32nd percentile – i.e., 32% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,470 others from the same source and published within six weeks on either side of this one. This one is in the 48th percentile – i.e., 48% of its contemporaries scored the same or lower than it.