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Plant Bioinformatics

Overview of attention for book
Cover of 'Plant Bioinformatics'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Using GenBank.
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    Chapter 2 UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View.
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    Chapter 3 KEGG Bioinformatics Resource for Plant Genomics and Metabolomics.
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    Chapter 4 Plant Bioinformatics
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    Chapter 5 The Plant Ontology: A Tool for Plant Genomics.
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    Chapter 6 Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data.
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    Chapter 7 Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.
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    Chapter 8 PGSB/MIPS Plant Genome Information Resources and Concepts for the Analysis of Complex Grass Genomes.
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    Chapter 9 MaizeGDB: The Maize Genetics and Genomics Database.
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    Chapter 10 WheatGenome.info: A Resource for Wheat Genomics Resource.
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    Chapter 11 User Guidelines for the Brassica Database: BRAD.
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    Chapter 12 TAG Sequence Identification of Genomic Regions Using TAGdb.
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    Chapter 13 Short Read Alignment Using SOAP2.
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    Chapter 14 Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings.
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    Chapter 15 Analysis of Genotyping-by-Sequencing (GBS) Data.
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    Chapter 16 Skim-Based Genotyping by Sequencing Using a Double Haploid Population to Call SNPs, Infer Gene Conversions, and Improve Genome Assemblies.
  18. Altmetric Badge
    Chapter 17 Finding and Characterizing Repeats in Plant Genomes.
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    Chapter 18 Analysis of RNA-Seq Data Using TopHat and Cufflinks.
Attention for Chapter 9: MaizeGDB: The Maize Genetics and Genomics Database.
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Chapter title
MaizeGDB: The Maize Genetics and Genomics Database.
Chapter number 9
Book title
Plant Bioinformatics
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3167-5_9
Pubmed ID
26519406
Book ISBNs
978-1-4939-3166-8, 978-1-4939-3167-5
Authors

Harper, Lisa, Gardiner, Jack, Andorf, Carson, Lawrence, Carolyn J, Lisa Harper, Jack Gardiner, Carson Andorf, Carolyn J. Lawrence

Editors

David Edwards

Abstract

MaizeGDB is the community database for biological information about the crop plant Zea mays. Genomic, genetic, sequence, gene product, functional characterization, literature reference, and person/organization contact information are among the datatypes stored at MaizeGDB. At the project's website ( http://www.maizegdb.org ) are custom interfaces enabling researchers to browse data and to seek out specific information matching explicit search criteria. In addition, pre-compiled reports are made available for particular types of data and bulletin boards are provided to facilitate communication and coordination among members of the community of maize geneticists.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
 Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 26 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 26 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 11 42%
Student > Ph. D. Student 6 23%
Student > Bachelor 2 8%
Lecturer 1 4%
Student > Doctoral Student 1 4%
Other 4 15%
Unknown 1 4%
Readers by discipline Count As %
Agricultural and Biological Sciences 17 65%
Biochemistry, Genetics and Molecular Biology 3 12%
Nursing and Health Professions 1 4%
Environmental Science 1 4%
Social Sciences 1 4%
Other 1 4%
Unknown 2 8%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 02 November 2015.
All research outputs
#18,429,829
of 22,831,537 outputs
Outputs from Methods in molecular biology
#7,920
of 13,126 outputs
Outputs of similar age
#284,422
of 393,555 outputs
Outputs of similar age from Methods in molecular biology
#846
of 1,470 outputs
Altmetric has tracked 22,831,537 research outputs across all sources so far. This one is in the 11th percentile – i.e., 11% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,126 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 24th percentile – i.e., 24% of its peers scored the same or lower than it.
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We're also able to compare this research output to 1,470 others from the same source and published within six weeks on either side of this one. This one is in the 28th percentile – i.e., 28% of its contemporaries scored the same or lower than it.

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