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Eukaryotic Genomic Databases

Overview of attention for book
Cover of 'Eukaryotic Genomic Databases'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk
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    Chapter 2 An Introduction to the Saccharomyces Genome Database (SGD)
  4. Altmetric Badge
    Chapter 3 Using the Candida Genome Database
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    Chapter 4 PomBase: The Scientific Resource for Fission Yeast
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    Chapter 5 EuPathDB: The Eukaryotic Pathogen Genomics Database Resource
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    Chapter 6 The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data
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    Chapter 7 Mouse Genome Informatics (MGI) Is the International Resource for Information on the Laboratory Mouse
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    Chapter 8 A Primer for the Rat Genome Database (RGD)
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    Chapter 9 Bovine Genome Database: Tools for Mining the Bos taurus Genome
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    Chapter 10 Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database
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    Chapter 11 Using ZFIN: Data Types, Organization, and Retrieval
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    Chapter 12 EchinoBase: Tools for Echinoderm Genome Analyses
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    Chapter 13 A Multi-Omics Database for Parasitic Nematodes and Trematodes
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    Chapter 14 Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes
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    Chapter 15 Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data
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    Chapter 16 Using FlyBase to Find Functionally Related Drosophila Genes
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    Chapter 17 Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects
  19. Altmetric Badge
    Chapter 18 Navigating the i5k Workspace@NAL: A Resource for Arthropod Genomes
Attention for Chapter 6: The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data
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  • Good Attention Score compared to outputs of the same age (69th percentile)
  • High Attention Score compared to outputs of the same age and source (87th percentile)

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Chapter title
The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data
Chapter number 6
Book title
Eukaryotic Genomic Databases
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7737-6_6
Pubmed ID
Book ISBNs
978-1-4939-7736-9, 978-1-4939-7737-6
Authors

Victoria Newman, Benjamin Moore, Helen Sparrow, Emily Perry, Newman, Victoria, Moore, Benjamin, Sparrow, Helen, Perry, Emily

Abstract

The Ensembl Genome Browser provides a wealth of freely available genomic data that can be accessed for many purposes by genetics, genomics, and molecular biology researchers. Herein we present two protocols for exploring different aspects of these data: a phenotype and its associated variants and genes, and a promoter and the epigenetic marks and protein-binding activity associated with it. These workflows illustrate a subset of the data types available through the Ensembl Browser, and can be considered a springboard for further exploration.

X Demographics

X Demographics

The data shown below were collected from the profiles of 7 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 27 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 27 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 4 15%
Student > Ph. D. Student 4 15%
Professor 2 7%
Researcher 2 7%
Student > Master 1 4%
Other 3 11%
Unknown 11 41%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 6 22%
Agricultural and Biological Sciences 6 22%
Medicine and Dentistry 3 11%
Computer Science 1 4%
Unknown 11 41%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 4. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 19 May 2018.
All research outputs
#6,799,046
of 23,057,470 outputs
Outputs from Methods in molecular biology
#2,028
of 13,196 outputs
Outputs of similar age
#135,897
of 442,487 outputs
Outputs of similar age from Methods in molecular biology
#189
of 1,499 outputs
Altmetric has tracked 23,057,470 research outputs across all sources so far. This one has received more attention than most of these and is in the 70th percentile.
So far Altmetric has tracked 13,196 research outputs from this source. They receive a mean Attention Score of 3.4. This one has done well, scoring higher than 84% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 442,487 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 69% of its contemporaries.
We're also able to compare this research output to 1,499 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 87% of its contemporaries.