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Eukaryotic Genomic Databases

Overview of attention for book
Cover of 'Eukaryotic Genomic Databases'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk
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    Chapter 2 An Introduction to the Saccharomyces Genome Database (SGD)
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    Chapter 3 Using the Candida Genome Database
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    Chapter 4 PomBase: The Scientific Resource for Fission Yeast
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    Chapter 5 EuPathDB: The Eukaryotic Pathogen Genomics Database Resource
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    Chapter 6 The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data
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    Chapter 7 Mouse Genome Informatics (MGI) Is the International Resource for Information on the Laboratory Mouse
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    Chapter 8 A Primer for the Rat Genome Database (RGD)
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    Chapter 9 Bovine Genome Database: Tools for Mining the Bos taurus Genome
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    Chapter 10 Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database
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    Chapter 11 Using ZFIN: Data Types, Organization, and Retrieval
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    Chapter 12 EchinoBase: Tools for Echinoderm Genome Analyses
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    Chapter 13 A Multi-Omics Database for Parasitic Nematodes and Trematodes
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    Chapter 14 Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes
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    Chapter 15 Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data
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    Chapter 16 Using FlyBase to Find Functionally Related Drosophila Genes
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    Chapter 17 Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran Insects
  19. Altmetric Badge
    Chapter 18 Navigating the i5k Workspace@NAL: A Resource for Arthropod Genomes
Attention for Chapter 1: Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk
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Chapter title
Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk
Chapter number 1
Book title
Eukaryotic Genomic Databases
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7737-6_1
Pubmed ID
Book ISBNs
978-1-4939-7736-9, 978-1-4939-7737-6
Authors

Martin Kollmar, Dominic Simm, Kollmar, Martin, Simm, Dominic

Abstract

The diArk Eukaryotic Genome Database is a manually curated and updated repository of available eukaryotic genome and transcriptome assemblies. diArk is a key resource for researchers interested in comparative eukaryotic genomics, and the entry point to browsing sequenced eukaryotes in general and to find the most closely related species to the own organism of interest in particular. The exponentially increasing number of sequenced species demands sophisticated search and data presentation tools. In this chapter we describe how to navigate the diArk database keeping a first-time user in mind.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 1 Mendeley reader of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 1 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 1 100%
Student > Doctoral Student 1 100%
Readers by discipline Count As %
Nursing and Health Professions 1 100%
Computer Science 1 100%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 May 2018.
All research outputs
#15,513,418
of 23,055,429 outputs
Outputs from Methods in molecular biology
#5,402
of 13,196 outputs
Outputs of similar age
#269,946
of 442,477 outputs
Outputs of similar age from Methods in molecular biology
#597
of 1,499 outputs
Altmetric has tracked 23,055,429 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,196 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 44th percentile – i.e., 44% of its peers scored the same or lower than it.
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We're also able to compare this research output to 1,499 others from the same source and published within six weeks on either side of this one. This one is in the 42nd percentile – i.e., 42% of its contemporaries scored the same or lower than it.