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Nonribosomal Peptide and Polyketide Biosynthesis

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Cover of 'Nonribosomal Peptide and Polyketide Biosynthesis'

Table of Contents

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    Book Overview
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    Chapter 1 Structural Biology of Nonribosomal Peptide Synthetases.
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    Chapter 2 The Assembly Line Enzymology of Polyketide Biosynthesis.
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    Chapter 3 Measurement of Nonribosomal Peptide Synthetase Adenylation Domain Activity Using a Continuous Hydroxylamine Release Assay
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    Chapter 4 Affinity Purification Method for the Identification of Nonribosomal Peptide Biosynthetic Enzymes Using a Synthetic Probe for Adenylation Domains
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    Chapter 5 Colorimetric Detection of the Adenylation Activity in Nonribosomal Peptide Synthetases
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    Chapter 6 Facile Synthetic Access to Glycopeptide Antibiotic Precursor Peptides for the Investigation of Cytochrome P450 Action in Glycopeptide Antibiotic Biosynthesis
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    Chapter 7 Reconstitution of Fungal Nonribosomal Peptide Synthetases in Yeast and In Vitro.
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    Chapter 8 The Continuing Development of E. coli as a Heterologous Host for Complex Natural Product Biosynthesis
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    Chapter 9 Screening for Expressed Nonribosomal Peptide Synthetases and Polyketide Synthases Using LC-MS/MS-Based Proteomics.
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    Chapter 10 Enhancing Nonribosomal Peptide Biosynthesis in Filamentous Fungi.
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    Chapter 11 In Situ Analysis of Bacterial Lipopeptide Antibiotics by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging.
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    Chapter 12 Secondary Metabolic Pathway-Targeted Metabolomics.
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    Chapter 13 Annotating and Interpreting Linear and Cyclic Peptide Tandem Mass Spectra.
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    Chapter 14 Bioinformatics Tools for the Discovery of New Nonribosomal Peptides
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    Chapter 15 The Use of ClusterMine360 for the Analysis of Polyketide and Nonribosomal Peptide Biosynthetic Pathways.
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    Chapter 16 Alignment-Free Methods for the Detection and Specificity Prediction of Adenylation Domains.
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    Chapter 17 Characterization of Nonribosomal Peptide Synthetases with NRPSsp.
Attention for Chapter 6: Facile Synthetic Access to Glycopeptide Antibiotic Precursor Peptides for the Investigation of Cytochrome P450 Action in Glycopeptide Antibiotic Biosynthesis
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Chapter title
Facile Synthetic Access to Glycopeptide Antibiotic Precursor Peptides for the Investigation of Cytochrome P450 Action in Glycopeptide Antibiotic Biosynthesis
Chapter number 6
Book title
Nonribosomal Peptide and Polyketide Biosynthesis
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3375-4_6
Pubmed ID
Book ISBNs
978-1-4939-3373-0, 978-1-4939-3375-4
Authors

Clara Brieke, Veronika Kratzig, Madeleine Peschke, Max J. Cryle, Brieke, Clara, Kratzig, Veronika, Peschke, Madeleine, Cryle, Max J.

Abstract

The glycopeptide antibiotics are an important class of complex, medically relevant peptide natural products. Given that the production of such compounds all stems from in vivo biosynthesis, understanding the mechanisms of the natural assembly system-consisting of a nonribosomal-peptide synthetase machinery (NRPS) and further modifying enzymes-is vital. In order to address the later steps of peptide biosynthesis, which are catalyzed by Cytochrome P450s that interact with the peptide-producing nonribosomal peptide synthetase, peptide substrates are required: these peptides must also be in a form that can be conjugated to carrier protein domains of the nonribosomal peptide synthetase machinery. Here, we describe a practical and effective route for the solid phase synthesis of glycopeptide antibiotic precursor peptides as their Coenzyme A (CoA) conjugates to allow enzymatic conjugation to carrier protein domains. This route utilizes Fmoc-chemistry suppressing epimerization of racemization-prone aryl glycine derivatives and affords high yields and excellent purities, requiring only a single step of simple solid phase extraction for chromatographic purification. With this, comprehensive investigations of interactions between various NRPS-bound substrates and Cytochrome P450s are enabled.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 9 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 1 11%
Unknown 8 89%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 2 22%
Student > Bachelor 1 11%
Lecturer 1 11%
Researcher 1 11%
Student > Postgraduate 1 11%
Other 0 0%
Unknown 3 33%
Readers by discipline Count As %
Chemistry 2 22%
Agricultural and Biological Sciences 2 22%
Biochemistry, Genetics and Molecular Biology 1 11%
Unknown 4 44%