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Synthetic Gene Networks

Overview of attention for book
Cover of 'Synthetic Gene Networks'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 In silico implementation of synthetic gene networks.
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    Chapter 2 Standardization in synthetic biology.
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    Chapter 3 Robust Optimal Design of Synthetic Biological Networks
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    Chapter 4 Predicting synthetic gene networks.
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    Chapter 5 Reprogramming a GFP Reporter Gene Subjects It to Complex Lentiviral Gene Regulation
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    Chapter 6 Synthetic Gene Networks
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    Chapter 7 Identifying and Optimizing Intracellular Protein–Protein Interactions Using Bacterial Genetic Selection
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    Chapter 8 Zinc-finger nucleases-based genome engineering to generate isogenic human cell lines.
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    Chapter 9 RNA-Based Networks: Using RNA Aptamers and Ribozymes as Synthetic Genetic Devices
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    Chapter 10 MicroRNA Circuits for Transcriptional Logic.
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    Chapter 11 Light-regulated gene expression in yeast.
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    Chapter 12 Light-controlled gene switches in Mammalian cells.
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    Chapter 13 Expressed protein modifications: making synthetic proteins.
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    Chapter 14 Using Transcription Machinery Engineering to Elicit Complex Cellular Phenotypes
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    Chapter 15 Streamlining of a Pseudomonas putida Genome Using a Combinatorial Deletion Method Based on Minitransposon Insertion and the Flp-FRT Recombination System
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    Chapter 16 Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria.
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    Chapter 17 Synthetic Networks: Oscillators and Toggle Switches for Escherichia coli
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    Chapter 18 Studying Microbial Communities in Biofilms
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    Chapter 19 Quantitative analysis of the spatiotemporal dynamics of a synthetic predator-prey ecosystem.
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    Chapter 20 Drosophila s2 schneider cells: a useful tool for rebuilding and redesigning approaches in synthetic biology.
  22. Altmetric Badge
    Chapter 21 Synthetic gene networks in plant systems.
  23. Altmetric Badge
    Chapter 22 Design and Construction of Synthetic Gene Networks in Mammalian Cells
  24. Altmetric Badge
    Chapter 23 Synthetic gene networks as blueprint for smart hydrogels.
Attention for Chapter 1: In silico implementation of synthetic gene networks.
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Chapter title
In silico implementation of synthetic gene networks.
Chapter number 1
Book title
Synthetic Gene Networks
Published in
Methods in molecular biology, November 2011
DOI 10.1007/978-1-61779-412-4_1
Pubmed ID
22083733
Book ISBNs
978-1-61779-411-7, 978-1-61779-412-4
Authors

Marchisio MA, Mario Andrea Marchisio

Abstract

Computational synthetic biology has borrowed methods, concepts, and techniques from systems biology and electrical engineering. Features of tools for the analysis of biochemical networks and the design of electric circuits have been combined to develop new software, where Standard Biological Parts (physically stored at the MIT Registry) have a mathematical description, based on mass action or Hill kinetics, and can be assembled into genetic networks in a visual, "drag & drop" fashion. Recent tools provide the user with databases, simulation environments, formal languages, and even algorithms for circuit automatic design to refine and speed up gene network construction. Moreover, advances in automation of DNA assembly indicate that synthetic biology software soon will drive the wet-lab implementation of DNA sequences.

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X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
 Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 67 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 1%
Unknown 66 99%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 4 6%
Student > Bachelor 3 4%
Other 2 3%
Professor 1 1%
Student > Master 1 1%
Other 1 1%
Unknown 55 82%
Readers by discipline Count As %
Agricultural and Biological Sciences 6 9%
Biochemistry, Genetics and Molecular Biology 2 3%
Computer Science 1 1%
Immunology and Microbiology 1 1%
Sports and Recreations 1 1%
Other 0 0%
Unknown 56 84%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 March 2012.
All research outputs
#18,305,470
of 22,663,969 outputs
Outputs from Methods in molecular biology
#7,811
of 13,021 outputs
Outputs of similar age
#195,075
of 238,860 outputs
Outputs of similar age from Methods in molecular biology
#303
of 441 outputs
Altmetric has tracked 22,663,969 research outputs across all sources so far. This one is in the 11th percentile – i.e., 11% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,021 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 24th percentile – i.e., 24% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 238,860 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 9th percentile – i.e., 9% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 441 others from the same source and published within six weeks on either side of this one. This one is in the 10th percentile – i.e., 10% of its contemporaries scored the same or lower than it.

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