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Protein-Carbohydrate Interactions

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Cover of 'Protein-Carbohydrate Interactions'

Table of Contents

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    Book Overview
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    Chapter 1 A Low-Volume, Parallel Copper-Bicinchoninic Acid (BCA) Assay for Glycoside Hydrolases
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    Chapter 2 Quantitative Kinetic Characterization of Glycoside Hydrolases Using High-Performance Anion-Exchange Chromatography (HPAEC)
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    Chapter 3 Measuring Enzyme Kinetics of Glycoside Hydrolases Using the 3,5-Dinitrosalicylic Acid Assay
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    Chapter 4 An Improved Kinetic Assay for the Characterization of Metal-Dependent Pectate Lyases
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    Chapter 5 Colorimetric Detection of Acetyl Xylan Esterase Activities
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    Chapter 6 Methods for Determining Glycosyltransferase Kinetics
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    Chapter 7 Analyzing Activities of Lytic Polysaccharide Monooxygenases by Liquid Chromatography and Mass Spectrometry
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    Chapter 8 Carbohydrate Depolymerization by Intricate Cellulosomal Systems
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    Chapter 9 Affinity Electrophoresis for Analysis of Catalytic Module-Carbohydrate Interactions
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    Chapter 10 Quantifying CBM Carbohydrate Interactions Using Microscale Thermophoresis
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    Chapter 11 Characterization of Protein-Carbohydrate Interactions by NMR Spectroscopy
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    Chapter 12 Measuring the Biomechanical Loosening Action of Bacterial Expansins on Paper and Plant Cell Walls
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    Chapter 13 Bioinspired Assemblies of Plant Cell Walls for Measuring Protein-Carbohydrate Interactions by FRAP
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    Chapter 14 CBMs as Probes to Explore Plant Cell Wall Heterogeneity Using Immunocytochemistry
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    Chapter 15 Determining the Localization of Carbohydrate Active Enzymes Within Gram-Negative Bacteria
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    Chapter 16 Analysis of Complex Carbohydrate Composition in Plant Cell Wall Using Fourier Transformed Mid-Infrared Spectroscopy (FT-IR)
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    Chapter 17 Separation and Visualization of Glycans by Fluorophore-Assisted Carbohydrate Electrophoresis
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    Chapter 18 A Rapid Procedure for the Purification of 8-Aminopyrene Trisulfonate (APTS)-Labeled Glycans for Capillary Electrophoresis (CE)-Based Enzyme Assays
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    Chapter 19 Probing the Complex Architecture of Multimodular Carbohydrate-Active Enzymes Using a Combination of Small Angle X-Ray Scattering and X-Ray Crystallography
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    Chapter 20 Metagenomics and CAZyme Discovery
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    Chapter 21 Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics
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    Chapter 22 Isolation and Preparation of Extracellular Proteins from Lignocellulose Degrading Fungi for Comparative Proteomic Studies Using Mass Spectrometry
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    Chapter 23 Erratum to: Colorimetric Detection of Acetyl Xylan Esterase Activities
Attention for Chapter 6: Methods for Determining Glycosyltransferase Kinetics
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Chapter title
Methods for Determining Glycosyltransferase Kinetics
Chapter number 6
Book title
Protein-Carbohydrate Interactions
Published in
Methods in molecular biology, April 2017
DOI 10.1007/978-1-4939-6899-2_6
Pubmed ID
Book ISBNs
978-1-4939-6898-5, 978-1-4939-6899-2
Authors

Maria Ngo, Michael D. L. Suits

Editors

D. Wade Abbott, Alicia Lammerts van Bueren

Abstract

Glycosyltransferases are a class of biosynthetic enzymes that transfer individual activated monosaccharide units to specific acceptors. Colorimetric assays using the detection of released products such as para-nitrophenol and coupled assays for inorganic phosphate detection allow for convenient and quantifiable kinetic characterization. These techniques may be applied to determine the enzymatic activity of glycosyltransferases by indirectly measuring the transfer of nucleotide-activated donor carbohydrate units to various cognate acceptor molecules. In addition to an overview of these methods, the protocol for quantifying the glycosyltransferase activity used for the characterization of penicillin-binding proteins (PBPs) involving the transfer of lipid II to form elongated murein chains during bacterial cell wall synthesis is described herein.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 7 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 7 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 2 29%
Student > Bachelor 2 29%
Unspecified 1 14%
Student > Doctoral Student 1 14%
Researcher 1 14%
Other 0 0%
Readers by discipline Count As %
Pharmacology, Toxicology and Pharmaceutical Science 2 29%
Unspecified 1 14%
Biochemistry, Genetics and Molecular Biology 1 14%
Agricultural and Biological Sciences 1 14%
Chemistry 1 14%
Other 1 14%