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Comparative Genomics

Overview of attention for book
Comparative Genomics
Springer US

Table of Contents

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    Book Overview
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    Chapter 1 The Theory of Gene Family Histories.
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    Chapter 2 Protein-Coding Gene Families in Prokaryote Genome Comparisons.
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    Chapter 3 Family-Free Genome Comparison.
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    Chapter 4 Methods for Pangenomic Core Detection.
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    Chapter 5 Step-by-Step Bacterial Genome Comparison.
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    Chapter 6 How to Obtain and Compare Metagenome-Assembled Genomes.
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    Chapter 7 Comparative Genome Annotation.
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    Chapter 8 Annotation and Comparative Genomics of Prokaryotic Transposable Elements.
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    Chapter 9 Genome Rearrangement Analysis : Cut and Join Genome Rearrangements and Gene Cluster Preserving Approaches.
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    Chapter 10 AGO, a Framework for the Reconstruction of Ancestral Syntenies and Gene Orders.
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    Chapter 11 A Guide to Phylogenomic Inference.
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    Chapter 12 Comparative RNA Genomics.
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    Chapter 13 Bioinformatic Approaches for Comparative Analysis of Viruses.
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    Chapter 14 Comparative Analyses of Bacteriophage Genomes.
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    Chapter 15 Comparative Genomics of Sex, Chromosomes, and Sex Chromosomes in Caenorhabditis elegans and Other Nematodes.
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    Chapter 16 Comparative Evolutionary Genomics in Insects.
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    Chapter 17 Comparative Methods for Demystifying Spatial Transcriptomics.
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    Chapter 18 Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance.
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    Chapter 19 VEuPathDB Resources: A Platform for Free Online Data Exploration, Integration, and Analysis.
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    Chapter 20 A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.
Attention for Chapter 18: Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance.
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Chapter title
Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance.
Chapter number 18
Book title
Comparative Genomics
Published in
Methods in molecular biology, January 2024
DOI 10.1007/978-1-0716-3838-5_18
Pubmed ID
Book ISBNs
978-1-07-163837-8, 978-1-07-163838-5
Authors

Alice R Wattam, Nicole Bowers, Thomas Brettin, Neal Conrad, Clark Cucinell, James J Davis, Allan W Dickerman, Emily M Dietrich, Ronald W Kenyon, Dustin Machi, Chunhong Mao, Marcus Nguyen, Robert D Olson, Ross Overbeek, Bruce Parrello, Gordon D Pusch, Maulik Shukla, Rick L Stevens, Veronika Vonstein, Andrew S Warren, Wattam, Alice R., Bowers, Nicole, Brettin, Thomas, Conrad, Neal, Cucinell, Clark, Davis, James J., Dickerman, Allan W., Dietrich, Emily M., Kenyon, Ronald W., Machi, Dustin, Mao, Chunhong, Nguyen, Marcus, Olson, Robert D., Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Stevens, Rick L., Vonstein, Veronika, Warren, Andrew S.

Abstract

As genomic and related data continue to expand, research biologists are often hampered by the computational hurdles required to analyze their data. The National Institute of Allergy and Infectious Diseases (NIAID) established the Bioinformatics Resource Centers (BRC) to assist researchers with their analysis of genome sequence and other omics-related data. Recently, the PAThosystems Resource Integration Center (PATRIC), the Influenza Research Database (IRD), and the Virus Pathogen Database and Analysis Resource (ViPR) BRCs merged to form the Bacterial and Viral Bioinformatics Resource Center (BV-BRC) at https://www.bv-brc.org/ . The combined BV-BRC leverages the functionality of the original resources for bacterial and viral research communities with a unified data model, enhanced web-based visualization and analysis tools, and bioinformatics services. Here we demonstrate how antimicrobial resistance data can be analyzed in the new resource.

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Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 10 June 2024.
All research outputs
#16,554,801
of 26,112,783 outputs
Outputs from Methods in molecular biology
#4,954
of 14,529 outputs
Outputs of similar age
#171,206
of 370,095 outputs
Outputs of similar age from Methods in molecular biology
#91
of 337 outputs
Altmetric has tracked 26,112,783 research outputs across all sources so far. This one is in the 34th percentile – i.e., 34% of other outputs scored the same or lower than it.
So far Altmetric has tracked 14,529 research outputs from this source. They receive a mean Attention Score of 3.5. This one has gotten more attention than average, scoring higher than 62% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 370,095 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 50% of its contemporaries.
We're also able to compare this research output to 337 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 69% of its contemporaries.