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Oat

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Cover of 'Oat'

Table of Contents

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    Book Overview
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    Chapter 1 Fluorescence In Situ Hybridization in Oat
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    Chapter 2 Oat Doubled Haploids Following Maize Pollination
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    Chapter 3 Wide Hybridization Between Oat and Pearl Millet
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    Chapter 4 Protocol for Producing Synthetic Polyploid Oats
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    Chapter 5 Manipulation of Oat Protoplasts for Transient Expression Assays
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    Chapter 6 Oat Anther Culture and Use of DH-Lines for Genetic Mapping
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    Chapter 7 Agrobacterium-Mediated Transformation of Leaf Base Segments
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    Chapter 8 Chromatographic Methods to Evaluate Nutritional Quality in Oat
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    Chapter 9 Determination of T-2 and HT-2 Toxins in Oats and Oat-Based Breakfast Cereals by Liquid-Chromatography Tandem Mass Spectrometry
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    Chapter 10 Multiplex Dipstick Immunoassay for Semiquantitative Determination of Fusarium Mycotoxins in Oat
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    Chapter 11 Microarray-Based Immunoassay for Parallel Quantification of Multiple Mycotoxins in Oat
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    Chapter 12 M13-Tailed Simple Sequence Repeat (SSR) Markers in Studies of Genetic Diversity and Population Structure of Common Oat Germplasm
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    Chapter 13 Genotyping-by-Sequencing and Its Application to Oat Genomic Research
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    Chapter 14 Genome-Wide Association Analysis Using R
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    Chapter 15 De Novo Transcriptome Assembly in Polyploid Species
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    Chapter 16 Isolation of Oat (Avena sativa L.) Total Proteins and Their Prolamin Fractions for 2D Electrophoresis
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    Chapter 17 2-DE Separation and Identification of Oat (Avena sativa L.) Proteins and Their Prolamin Fractions
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    Chapter 18 Selected Bioinformatic Tools and MS (MALDI-TOF, PMF) Techniques Used in the Strategy for the Identification of Oat Proteins After 2-DE
Attention for Chapter 14: Genome-Wide Association Analysis Using R
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Chapter title
Genome-Wide Association Analysis Using R
Chapter number 14
Book title
Oat
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6682-0_14
Pubmed ID
Book ISBNs
978-1-4939-6680-6, 978-1-4939-6682-0
Authors

Julio Isidro-Sánchez, Deniz Akdemir, Gracia Montilla-Bascón

Editors

Sebastian Gasparis

Abstract

This chapter provides a practical overview of the statistical analysis using R [1] and genotype by sequencing (GBS) markers for genome-wide association studies (GWAS) in oats. Statistical analysis is performed by R package rrBLUP [2] and issues associated with the analysis are addressed along with the R code. The ultimate aim of this chapter is to provide a practical guideline to do GWAS analysis using R, rather than describe the theory in depth. For more details about the subject, readers are referred to the excellent resource book in GWAS [3]. A basic programming experience in R is assumed.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 108 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 1 <1%
United States 1 <1%
Unknown 106 98%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 22 20%
Student > Master 14 13%
Researcher 13 12%
Student > Bachelor 10 9%
Student > Postgraduate 6 6%
Other 12 11%
Unknown 31 29%
Readers by discipline Count As %
Agricultural and Biological Sciences 40 37%
Biochemistry, Genetics and Molecular Biology 23 21%
Mathematics 4 4%
Medicine and Dentistry 2 2%
Pharmacology, Toxicology and Pharmaceutical Science 1 <1%
Other 7 6%
Unknown 31 29%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 17 November 2020.
All research outputs
#18,530,362
of 22,952,268 outputs
Outputs from Methods in molecular biology
#7,935
of 13,137 outputs
Outputs of similar age
#311,015
of 420,594 outputs
Outputs of similar age from Methods in molecular biology
#733
of 1,155 outputs
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