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Polyploidy

Overview of attention for book
Cover of 'Polyploidy'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Inference of Ancient Polyploidy from Genomic Data
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    Chapter 2 Navigating the CoGe Online Software Suite for Polyploidy Research
  4. Altmetric Badge
    Chapter 3 Inference of Ancient Polyploidy Using Transcriptome Data.
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    Chapter 4 POInT: Modeling Polyploidy in the Era of Ubiquitous Genomics
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    Chapter 5 Applying Machine Learning to Classify the Origins of Gene Duplications
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    Chapter 6 Phasing Gene Copies into Polyploid Subgenomes Using a Bayesian Phylogenetic Approach
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    Chapter 7 Constraining Whole-Genome Duplication Events in Geological Time
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    Chapter 8 SCORPiOs, a Novel Method to Reconstruct Gene Phylogenies in the Context of a Known WGD Event
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    Chapter 9 Inferring Chromosome Number Changes Along a Phylogeny Using chromEvol
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    Chapter 10 PURC Provides Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem.
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    Chapter 11 Analyses of Genome Regulatory Evolution Following Whole-Genome Duplication Using the Phylogenetic EVE Model
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    Chapter 12 Beyond Transcript Concentrations: Quantifying Polyploid Expression Responses per Biomass, per Genome, and per Cell with RNA-Seq.
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    Chapter 13 A Robust Methodology for Assessing Homoeolog-Specific Expression
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    Chapter 14 Analyzing Autopolyploid Genetic Data Using GenoDive
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    Chapter 15 Inference of Polyploid Origin and Inheritance Mode from Population Genomic Data
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    Chapter 16 Population Genomic Analysis of Diploid-Autopolyploid Species.
  18. Altmetric Badge
    Chapter 17 Inferring the Demographic History and Inheritance Mode of Tetraploid Species Using ABC
  19. Altmetric Badge
    Chapter 18 Studying Whole-Genome Duplication Using Experimental Evolution of Chlamydomonas
  20. Altmetric Badge
    Chapter 19 Studying Whole-Genome Duplication Using Experimental Evolution of Spirodela polyrhiza.
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    Chapter 20 Experimental Approaches to Generate and Isolate Human Tetraploid Cells
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    Chapter 21 Measuring Cellular Ploidy In Situ by Light Microscopy.
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    Chapter 22 Using Mosaic Cell Labeling to Visualize Polyploid Cells in the Drosophila Brain
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    Chapter 23 Sequencing and Assembly of Polyploid Genomes.
  25. Altmetric Badge
    Chapter 24 Genome Editing by CRISPR/Cas9 in Polyploids
  26. Altmetric Badge
    Chapter 25 Developing a CRISPR System in Nongenetic Model Polyploids.
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    Chapter 26 Efficiently Editing Multiple Duplicated Homeologs and Alleles for Recurrent Polyploids.
Attention for Chapter 19: Studying Whole-Genome Duplication Using Experimental Evolution of Spirodela polyrhiza.
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About this Attention Score

  • Above-average Attention Score compared to outputs of the same age (60th percentile)
  • High Attention Score compared to outputs of the same age and source (85th percentile)

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Chapter title
Studying Whole-Genome Duplication Using Experimental Evolution of Spirodela polyrhiza.
Chapter number 19
Book title
Polyploidy
Published in
Methods in molecular biology, January 2023
DOI 10.1007/978-1-0716-2561-3_19
Pubmed ID
36720823
Book ISBNs
978-1-07-162560-6, 978-1-07-162561-3
Authors

Wu, Tian, Natran, Annelore, Prost, Lucas, Aydogdu, Eylem, Van de Peer, Yves, Bafort, Quinten, Aydogdu Lohaus, Eylem, Tian Wu, Annelore Natran, Lucas Prost, Eylem Aydogdu, Yves Van de Peer, Quinten Bafort

Abstract

In this chapter, we present the use of Spirodela polyrhiza in experiments designed to study the evolutionary impact of whole-genome duplication (WGD). We shortly introduce this duckweed species and explain why it is a suitable model for experimental evolution. Subsequently, we discuss the most relevant steps and methods in the design of a ploidy-related duckweed experiment. These steps include strain selection, ploidy determination, different methods of making polyploid duckweeds, replication, culturing conditions, preservation, and the ways to quantify phenotypic and transcriptomic change.

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 Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 23 February 2023.
All research outputs
#14,589,895
of 25,378,284 outputs
Outputs from Methods in molecular biology
#3,735
of 14,183 outputs
Outputs of similar age
#185,422
of 479,477 outputs
Outputs of similar age from Methods in molecular biology
#96
of 722 outputs
Altmetric has tracked 25,378,284 research outputs across all sources so far. This one is in the 41st percentile – i.e., 41% of other outputs scored the same or lower than it.
So far Altmetric has tracked 14,183 research outputs from this source. They receive a mean Attention Score of 3.5. This one has gotten more attention than average, scoring higher than 72% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 479,477 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 60% of its contemporaries.
We're also able to compare this research output to 722 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 85% of its contemporaries.

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