Variant Calling from RNA-seq Data Using the GATK Joint Genotyping Workflow: The Genome Analysis Toolkit (GATK) developed at the Broad Institute provides state-of-the-art pipelines for germline and somatic variant discovery and genotyping. Unfortunately,… h
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Preanalytical Variables and Sample Quality Control for Clinical Variant Analysis https://t.co/vPfZAEMqVw #Liquidbiopsy #ctDNA #NextGenerationSequencing
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SMuRF 2 is an ensemble method that combines the predictions & auxiliary features from individual mutation callers using supervised machine learning. This paper provides workflow to predict SNVs & indels in cancer genomes & exomes. Read: https
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Octopus: Genotyping and Haplotyping in Diverse Experimental Designs https://t.co/bokleN5L8K https://t.co/EvZHODdqQC