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Variant Calling

Overview of attention for book
Cover of 'Variant Calling'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Data Processing and Germline Variant Calling with the Sentieon Pipeline
  3. Altmetric Badge
    Chapter 2 MuSE: A Novel Approach to Mutation Calling with Sample-Specific Error Modeling
  4. Altmetric Badge
    Chapter 3 Octopus: Genotyping and Haplotyping in Diverse Experimental Designs
  5. Altmetric Badge
    Chapter 4 Accurate Ensemble Prediction of Somatic Mutations with SMuRF2.
  6. Altmetric Badge
    Chapter 5 Detecting Medium and Large Insertions and Deletions with transIndel
  7. Altmetric Badge
    Chapter 6 DECoN: A Detection and Visualization Tool for Exonic Copy Number Variants
  8. Altmetric Badge
    Chapter 7 FACETS: Fraction and Allele-Specific Copy Number Estimates from Tumor Sequencing
  9. Altmetric Badge
    Chapter 8 Meerkat: An Algorithm to Reliably Identify Structural Variations and Predict Their Forming Mechanisms
  10. Altmetric Badge
    Chapter 9 Structural Variant Detection from Long-Read Sequencing Data with cuteSV
  11. Altmetric Badge
    Chapter 10 Identifying Somatic Mitochondrial DNA Mutations
  12. Altmetric Badge
    Chapter 11 Identification, Quantification, and Testing of Alternative Splicing Events from RNA-Seq Data Using SplAdder
  13. Altmetric Badge
    Chapter 12 PipeIT2: Somatic Variant Calling Workflow for Ion Torrent Sequencing Data
  14. Altmetric Badge
    Chapter 13 Variant Calling from RNA-seq Data Using the GATK Joint Genotyping Workflow
  15. Altmetric Badge
    Chapter 14 UMI-Varcal: A Low-Frequency Variant Caller for UMI-Tagged Paired-End Sequencing Data
  16. Altmetric Badge
    Chapter 15 Alignment-Free Genotyping of Known Variations with MALVA
  17. Altmetric Badge
    Chapter 16 Kmer2SNP: Reference-Free Heterozygous SNP Calling Using k-mer Frequency Distributions
  18. Altmetric Badge
    Chapter 17 Somatic Single-Nucleotide Variant Calling from Single-Cell DNA Sequencing Data Using SCAN-SNV.
  19. Altmetric Badge
    Chapter 18 Copy Number Variation Detection by Single-Cell DNA Sequencing with SCOPE
  20. Altmetric Badge
    Chapter 19 Variant Annotation and Functional Prediction: SnpEff
  21. Altmetric Badge
    Chapter 20 Annotating Cancer-Related Variants at Protein–Protein Interface with Structure-PPi
  22. Altmetric Badge
    Chapter 21 Preanalytical Variables and Sample Quality Control for Clinical Variant Analysis
Attention for Chapter 13: Variant Calling from RNA-seq Data Using the GATK Joint Genotyping Workflow
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Chapter title
Variant Calling from RNA-seq Data Using the GATK Joint Genotyping Workflow
Chapter number 13
Book title
Variant Calling
Published in
Methods in molecular biology, February 2012
DOI 10.1007/978-1-0716-2293-3_13
Pubmed ID
35751817
Book ISBNs
978-1-07-162292-6, 978-1-07-162293-3
Authors

Brouard, Jean-Simon, Bissonnette, Nathalie, Jean-Simon Brouard, Nathalie Bissonnette

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X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
 Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 10 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 3 30%
Student > Bachelor 1 10%
Other 1 10%
Student > Master 1 10%
Unknown 4 40%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 30%
Agricultural and Biological Sciences 1 10%
Psychology 1 10%
Engineering 1 10%
Unknown 4 40%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 08 August 2023.
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#18,375,478
of 22,759,618 outputs
Outputs from Methods in molecular biology
#7,870
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#120,962
of 155,678 outputs
Outputs of similar age from Methods in molecular biology
#46
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