↓ Skip to main content
What is this page? Embed badge

Variant Calling

Overview of attention for book
Cover of 'Variant Calling'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Data Processing and Germline Variant Calling with the Sentieon Pipeline
  3. Altmetric Badge
    Chapter 2 MuSE: A Novel Approach to Mutation Calling with Sample-Specific Error Modeling
  4. Altmetric Badge
    Chapter 3 Octopus: Genotyping and Haplotyping in Diverse Experimental Designs
  5. Altmetric Badge
    Chapter 4 Accurate Ensemble Prediction of Somatic Mutations with SMuRF2.
  6. Altmetric Badge
    Chapter 5 Detecting Medium and Large Insertions and Deletions with transIndel
  7. Altmetric Badge
    Chapter 6 DECoN: A Detection and Visualization Tool for Exonic Copy Number Variants
  8. Altmetric Badge
    Chapter 7 FACETS: Fraction and Allele-Specific Copy Number Estimates from Tumor Sequencing
  9. Altmetric Badge
    Chapter 8 Meerkat: An Algorithm to Reliably Identify Structural Variations and Predict Their Forming Mechanisms
  10. Altmetric Badge
    Chapter 9 Structural Variant Detection from Long-Read Sequencing Data with cuteSV
  11. Altmetric Badge
    Chapter 10 Identifying Somatic Mitochondrial DNA Mutations
  12. Altmetric Badge
    Chapter 11 Identification, Quantification, and Testing of Alternative Splicing Events from RNA-Seq Data Using SplAdder
  13. Altmetric Badge
    Chapter 12 PipeIT2: Somatic Variant Calling Workflow for Ion Torrent Sequencing Data
  14. Altmetric Badge
    Chapter 13 Variant Calling from RNA-seq Data Using the GATK Joint Genotyping Workflow
  15. Altmetric Badge
    Chapter 14 UMI-Varcal: A Low-Frequency Variant Caller for UMI-Tagged Paired-End Sequencing Data
  16. Altmetric Badge
    Chapter 15 Alignment-Free Genotyping of Known Variations with MALVA
  17. Altmetric Badge
    Chapter 16 Kmer2SNP: Reference-Free Heterozygous SNP Calling Using k-mer Frequency Distributions
  18. Altmetric Badge
    Chapter 17 Somatic Single-Nucleotide Variant Calling from Single-Cell DNA Sequencing Data Using SCAN-SNV.
  19. Altmetric Badge
    Chapter 18 Copy Number Variation Detection by Single-Cell DNA Sequencing with SCOPE
  20. Altmetric Badge
    Chapter 19 Variant Annotation and Functional Prediction: SnpEff
  21. Altmetric Badge
    Chapter 20 Annotating Cancer-Related Variants at Protein–Protein Interface with Structure-PPi
  22. Altmetric Badge
    Chapter 21 Preanalytical Variables and Sample Quality Control for Clinical Variant Analysis
Attention for Chapter 18: Copy Number Variation Detection by Single-Cell DNA Sequencing with SCOPE
Altmetric Badge

About this Attention Score

  • Average Attention Score compared to outputs of the same age
  • Good Attention Score compared to outputs of the same age and source (75th percentile)

Mentioned by

twitter
3 X users

Citations

dimensions_citation
3 Dimensions

Readers on

mendeley
1 Mendeley
Summary X Dimensions citations

This page is provided by Altmetric.