R-Loops

Table of Contents

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   Book Overview
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   Chapter 1 Direct R-Loop Visualization on Genomic DNA by Native Automated Electron Microscopy
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   Chapter 2 Detection of R-Loop Structures by Immunofluorescence Using the S9.6 Monoclonal Antibody
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   Chapter 3 R-Loop Detection in Bacteria
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   Chapter 4 Detection of R-Loops by In Vivo and In Vitro Cytosine Deamination in Saccharomyces cerevisiae
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   Chapter 5 Identification of RNA–DNA Hybrids Associated with R-Loops at the IgH Switch Sequence in Activated B Cells
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   Chapter 6 Locus-Specific Analysis of Replication Dynamics and Detection of DNA–RNA Hybrids by Immuno Electron Microscopy
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   Chapter 7 RNase H1, the Gold Standard for R-Loop Detection
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   Chapter 8 RNase H1 Hybrid-Binding Domain-Based Tools for Cellular Biology Studies of DNA–RNA Hybrids in Mammalian Cells
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    Chapter 9 Detection and Quantification of RNA Modifications on RNA-DNA Hybrids Using SID-UPLC-MS/MS.
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    Chapter 10 DNA-RNA Hybrids at Telomeres in Budding Yeast.
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    Chapter 11 Detection of TERRA R-Loops at Human Telomeres
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    Chapter 12 R-Loops and Mitochondrial DNA Metabolism
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    Chapter 13 Highly Purified Top1-Bound DNA Fragments
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    Chapter 14 R-Loop Immunoprecipitation: A Method to Detect R-Loop Interacting Factors
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    Chapter 15 Studies on Protein–RNA:DNA Hybrid Interactions by Microscale Thermophoresis (MST)
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    Chapter 16 Studying R-Loop Recognizing Proteins Using Single-Molecule DNA Curtain Technique and Electrophoretic Mobility Shift Assay
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    Chapter 17 Immunostaining and Protein Pull-Down of Methyl-5-Cytosine-Marked RNA:DNA Hybrids
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    Chapter 18 In Vitro Binding of GADD45A to RNA:DNA Hybrids
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    Chapter 19 Proximity Ligation Assay for Detection of R-Loop Complexes upon DNA Damage
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    Chapter 20 Biochemical Analysis of RNA–DNA Hybrid and R-Loop Unwinding Via Motor Proteins
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    Chapter 21 Topology of RNA:DNA Hybrids and R-Loops in Yeast
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    Chapter 22 Detecting and Mapping N6-Methyladenosine on RNA/DNA Hybrids
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    Chapter 23 Genome-Wide Native R-Loop Profiling by R-Loop Cleavage Under Targets and Tagmentation (R-Loop CUT&Tag)
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    Chapter 24 Mapping R-Loops Using Catalytically Inactive RNaseH1 (R-ChIP)
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    Chapter 25 Targeted Nuclease Approaches for Mapping Native R-Loops
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    Chapter 26 Quantitative DNA–RNA Immunoprecipitation Sequencing with Spike-Ins
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    Chapter 27 DNA:RNA Immunoprecipitation from S. pombe Cells for qPCR and Genome-Wide Sequencing
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    Chapter 28 Genome-Wide Analysis of DNA–RNA Hybrids in Yeast by DRIPc-Seq and DRIP-Seq
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    Chapter 29 Quantitative, Convenient, and Efficient Genome-Wide R-Loop Profiling by ssDRIP-Seq in Multiple Organisms