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Cytochrome P450 Protocols

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Cover of 'Cytochrome P450 Protocols'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Bioluminescent Assays for Cytochrome P450 Enzymes
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    Chapter 2 Simultaneous Determination of Multiple CYP Inhibition Constants using a Cocktail-Probe Approach
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    Chapter 3 High-Throughput Mass Spectrometric Cytochrome P450 Inhibition Screening
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    Chapter 4 The Synthesis, Characterization, and Application of 13C-Methyl Isocyanide as an NMR Probe of Heme Protein Active Sites
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    Chapter 5 High-Throughput Fluorescence Assay for Cytochrome P450 Mechanism-Based Inactivators
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    Chapter 6 Identification of Endogenous Substrates of Orphan Cytochrome P450 Enzymes Through the Use of Untargeted Metabolomics Approaches
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    Chapter 7 Genetic and Mass Spectrometric Tools for Elucidating the Physiological Function(s) of Cytochrome P450 Enzymes from Mycobacterium tuberculosis.
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    Chapter 8 An Escherichia coli Expression-Based Approach for Porphyrin Substitution in Heme Proteins
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    Chapter 9 Expression in Escherichia coli of a Cytochrome P450 Enzyme with a Cobalt Protoporphyrin IX Prosthetic Group
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    Chapter 10 Nanodiscs in the Studies of Membrane-Bound Cytochrome P450 Enzymes
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    Chapter 11 Rapid LC-MS Drug Metabolite Profiling Using Bioreactor Particles
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    Chapter 12 Fluorescence-Based Screening of Cytochrome P450 Activities in Intact Cells
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    Chapter 13 Screening for Cytochrome P450 Reactivity with a Reporter Enzyme
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    Chapter 14 High-Throughput Fluorescence Assay of Cytochrome P450 3A4.
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    Chapter 15 Targeted Protein Capture for Analysis of Electrophile-Protein Adducts
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    Chapter 16 DNA Shuffling of Cytochrome P450 Enzymes
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    Chapter 17 Measurement of P450 Difference Spectra Using Intact Cells
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    Chapter 18 DNA Shuffling of Cytochromes P450 for Indigoid Pigment Production
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    Chapter 19 P450 Oxidoreductase: Genotyping, Expression, Purification of Recombinant Protein, and Activity Assessments of Wild-Type and Mutant Protein
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    Chapter 20 LICRED: A Versatile Drop-In Vector for Rapid Generation of Redox-Self-Sufficient Cytochromes P450
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    Chapter 21 Update on Allele Nomenclature for Human Cytochromes P450 and the Human Cytochrome P450 Allele (CYP-Allele) Nomenclature Database
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    Chapter 22 Simultaneous In Vivo Phenotyping of CYP Enzymes
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    Chapter 23 Detection of Regulatory Polymorphisms: High-Throughput Capillary DNase I Footprinting
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    Chapter 24 Isolation of Mouse Hepatocytes
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    Chapter 25 Highly Efficient SiRNA and Gene Transfer into Hepatocyte-Like HepaRG Cells and Primary Human Hepatocytes: New Means for Drug Metabolism and Toxicity Studies
Attention for Chapter 7: Genetic and Mass Spectrometric Tools for Elucidating the Physiological Function(s) of Cytochrome P450 Enzymes from Mycobacterium tuberculosis.
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Chapter title
Genetic and Mass Spectrometric Tools for Elucidating the Physiological Function(s) of Cytochrome P450 Enzymes from Mycobacterium tuberculosis.
Chapter number 7
Book title
Cytochrome P450 Protocols
Published in
Methods in molecular biology, January 2013
DOI 10.1007/978-1-62703-321-3_7
Pubmed ID
Book ISBNs
978-1-62703-320-6, 978-1-62703-321-3
Authors

Hugues Ouellet, Eric D. Chow, Shenheng Guan, Jeffery S. Cox, Alma L. Burlingame, Paul R. Ortiz de Montellano, Ouellet, Hugues, Chow, Eric D., Guan, Shenheng, Cox, Jeffery S., Burlingame, Alma L., Montellano, Paul R. Ortiz de

Abstract

Tuberculosis remains a leading cause of human mortality. The emergence of strains of Mycobacterium tuberculosis (Mtb), the causative agent, that are resistant to first- and second-line antitubercular drugs urges the development of new therapeutics. The genome of Mtb encodes 20 cytochrome P450 enzymes, at least some of which are potential candidates (CYP121, CYP125, and CYP128) for drug targeting. In this regard, we examined the specific role of CYP125 in the cholesterol degradation pathway, using genetic and mass spectrometric approaches. The analysis of lipid profiles from Mtb cells grown on cholesterol revealed that CYP125, by virtue of its C26-monooxygenase activity, is essential for cholesterol degradation, and, consequently, for the incorporation of side-chain carbon atoms into cellular lipids, as evidenced by an increase in the mass of the methyl-branched phthiocerol dimycocerosates (PDIM). Moreover, this work also led to the identification of cholest-4-en-3-one as a source of cellular toxicity. Herein, we describe the experimental procedures that led to elucidation of the physiological function of CYP125. A similar approach can be used to study other important Mtb P450 enzymes.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 9 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 9 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 2 22%
Researcher 2 22%
Professor 1 11%
Student > Doctoral Student 1 11%
Student > Bachelor 1 11%
Other 1 11%
Unknown 1 11%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 33%
Agricultural and Biological Sciences 2 22%
Chemistry 1 11%
Unknown 3 33%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 12 March 2013.
All research outputs
#18,332,122
of 22,701,287 outputs
Outputs from Methods in molecular biology
#7,845
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Outputs of similar age
#217,991
of 280,698 outputs
Outputs of similar age from Methods in molecular biology
#220
of 340 outputs
Altmetric has tracked 22,701,287 research outputs across all sources so far. This one is in the 11th percentile – i.e., 11% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,076 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 24th percentile – i.e., 24% of its peers scored the same or lower than it.
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We're also able to compare this research output to 340 others from the same source and published within six weeks on either side of this one. This one is in the 12th percentile – i.e., 12% of its contemporaries scored the same or lower than it.