Chapter 1 Capturing Chromosome Conformation

Chapter 3 4C-Seq: Interrogating Chromatin Looping with Circular Chromosome Conformation Capture

Chapter 4 Analysis, Modeling, and Visualization of Chromosome Conformation Capture Experiments

Chapter 5 Targeted DNase Hi-C

Chapter 6 C-HiC: A High-Resolution Method for Unbiased Chromatin Conformation Capture Targeting Small Locus

Chapter 7 Computational Analysis of Hi-C Data

Chapter 8 Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP

Chapter 9 Single-Cell DamID to Capture Contacts Between DNA and the Nuclear Lamina in Individual Mammalian Cells

Chapter 10 Formaldehyde-Mediated Snapshot of Nuclear Architecture

Chapter 11 Visualization of Chromatin Dynamics by Live Cell Microscopy Using CRISPR/Cas9 Gene Editing and ANCHOR Labeling

Chapter 12 Preparing Map of Chromosome Territory Distribution Frequency

Chapter 13 Higher-Order Chromatin Organization Using 3D DNA Fluorescent In Situ Hybridization

Chapter 14 3D Immuno-DNA Fluorescence In Situ Hybridization (FISH) for Detection of HIV-1 and Cellular Genes in Primary CD4+ T Cells

Chapter 15 Visualization of Nuclear and Cytoplasmic Long Noncoding RNAs at Single-Cell Level by RNA-FISH

Chapter 16 3D COMBO chrRNA–DNA–ImmunoFISH

Chapter 17 An Algorithm for the Analysis of the 3D Spatial Organization of the Genome