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Chapter 5 DNA Barcoding Amphibians and Reptiles

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Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 DNA barcodes: methods and protocols.
  3. Altmetric Badge
    Chapter 2 Introduction to animal DNA barcoding protocols.
  4. Altmetric Badge
    Chapter 3 DNA Barcodes for Insects
  5. Altmetric Badge
    Chapter 4 DNA Barcoding Methods for Invertebrates
  6. Altmetric Badge
    Chapter 5 DNA Barcoding Amphibians and Reptiles
  7. Altmetric Badge
    Chapter 6 DNA barcoding fishes.
  8. Altmetric Badge
    Chapter 7 DNA Barcoding Birds: From Field Collection to Data Analysis
  9. Altmetric Badge
    Chapter 8 DNA Barcoding in Mammals
  10. Altmetric Badge
    Chapter 9 Methods for DNA Barcoding of Fungi
  11. Altmetric Badge
    Chapter 10 Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms.
  12. Altmetric Badge
    Chapter 11 DNA Barcoding Methods for Land Plants
  13. Altmetric Badge
    Chapter 12 Field Information Management Systems for DNA Barcoding
  14. Altmetric Badge
    Chapter 13 Laboratory information management systems for DNA barcoding.
  15. Altmetric Badge
    Chapter 14 DNA Extraction, Preservation, and Amplification
  16. Altmetric Badge
    Chapter 15 DNA Mini-barcodes
  17. Altmetric Badge
    Chapter 16 Ways to mix multiple PCR amplicons into single 454 run for DNA barcoding.
  18. Altmetric Badge
    Chapter 17 The Practical Evaluation of DNA Barcode Efficacy
  19. Altmetric Badge
    Chapter 18 Plant DNA Barcodes, Taxonomic Management, and Species Discovery in Tropical Forests
  20. Altmetric Badge
    Chapter 19 Construction and analysis of phylogenetic trees using DNA barcode data.
  21. Altmetric Badge
    Chapter 20 Phylogenetic Analyses of Ecological Communities Using DNA Barcode Data
  22. Altmetric Badge
    Chapter 21 FISH-BOL, A Case Study for DNA Barcodes
  23. Altmetric Badge
    Chapter 22 Generating Plant DNA Barcodes for Trees in Long-Term Forest Dynamics Plots
  24. Altmetric Badge
    Chapter 23 Future directions.
Attention for Chapter 19: Construction and analysis of phylogenetic trees using DNA barcode data.
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Chapter title
Construction and analysis of phylogenetic trees using DNA barcode data.
Chapter number 19
Book title
DNA Barcodes
Published in
Methods in molecular biology, March 2012
DOI 10.1007/978-1-61779-591-6_19
Pubmed ID
Book ISBNs
978-1-61779-590-9, 978-1-61779-591-6
Authors

Erickson DL, Driskell AC, Erickson, David L., Driskell, Amy C., David L. Erickson, Amy C. Driskell

Abstract

The assembly of sequence data obtained from DNA barcodes into phylogenies or NJ trees has proven highly useful in estimating relatedness among species as well as providing a framework in which hypotheses regarding the evolution of traits or species distributions may be investigated. In this chapter, we outline the process by which DNA sequence data is assembled into a phylogenetically informative matrix, and then provide details on the methods to reconstruct NJ or phylogenetic trees that employ DNA barcode data, using only barcode data or combining barcodes with other data.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 51 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Spain 2 4%
Germany 2 4%
Unknown 47 92%

Demographic breakdown

Readers by professional status Count As %
Student > Master 16 31%
Student > Ph. D. Student 9 18%
Researcher 6 12%
Student > Bachelor 4 8%
Other 3 6%
Other 6 12%
Unknown 7 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 29 57%
Environmental Science 7 14%
Biochemistry, Genetics and Molecular Biology 4 8%
Computer Science 1 2%
Economics, Econometrics and Finance 1 2%
Other 2 4%
Unknown 7 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 19 December 2012.
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#21,053,497
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Outputs from Methods in molecular biology
#9,158
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Outputs of similar age
#135,863
of 173,298 outputs
Outputs of similar age from Methods in molecular biology
#36
of 56 outputs
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